Module 36

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Hemi-module gene counts:

644 probesets in hemi-module A.
10 probesets in hemi-module B.
Note: While the mapping of probesets to genes is usually one-to-one, some genes are targeted by multiple probesets, some probesets target multiple genes, and some probesets do not target any genes (i.e., the region of the genome they match is no longer considered genic).

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Contrast SVE:

Signed variance explained (SVE) provides an indication of how similar a set of fold changes are to a gene module’s weight vector. An SVE value of 0.3, for example, indicates that 30% of the variance explained by the entire module set is accounted for by the module in question. Shown here are the SVE values for this module across a compendium of fold changes (contrasts). Extreme SVE values (e.g., > 0.05) indicate that those contrasts specifically induce (orange dots) or specifically repress (blue dots) this module. Examining the experimental conditions being compared in such contrasts (see tables below the figure) may provide insight into the gene module’s function.

Positive SVE Contrasts:

	Contrast.Num	SVE	GEO.GSE	Cond.1	Cond.2	Mutation
GSE12298B.s1t1.vs.s0t1	683	0.17	GSE12298	fenamiphos_low_dose-rep1	fenamiphos_control-rep1
GSE23528A.s1t1.vs.s0t1	467	0.13	GSE23528	Adult at T2 in LD, time-series experiment 3	Adult at T2, non-entrained control time-series experiment 4
GSE28494.s1t2.vs.s0t2	421	0.10	GSE28494	lin-54(n3423) dissected germline 1	wild-type N2 dissected germline 1	lin-54
GSE41366B.s1t1.vs.s0t1	274	0.09	GSE41366	low_DDVP-8h_expose-14h_harvest-rep1	control-8h_expose-14h_harvest-rep1
GSE23528A.s1t5.vs.s0t5	465	0.08	GSE23528	Adult at T18 in LD, time-series experiment 3	Adult at T18, non-entrained control time-series experiment 4
GSE23528A.s1t3.vs.s0t3	461	0.07	GSE23528	Adult at T10 in LD, time-series experiment 3	Adult at T10, non-entrained control time-series experiment 4
GSE41366B.s0t2.vs.s0t1	279	0.06	GSE41366	control-8h_expose-20h_harvest-rep1	control-8h_expose-14h_harvest-rep1
GSE23528A.s0t4.vs.s0t1	484	0.06	GSE23528	Adult at T14, non-entrained control time-series experiment 4	Adult at T2, non-entrained control time-series experiment 4
GSE23528A.s1t2.vs.s1t1	477	0.06	GSE23528	Adult at T6 in LD, time-series experiment 3	Adult at T2 in LD, time-series experiment 3
GSE23528A.s1t6.vs.s0t6	469	0.06	GSE23528	Adult at T22 in LD, time-series experiment 3	Adult at T22, non-entrained control time-series experiment 4
GSE54513.s4t1.vs.s2t1	109	0.06	GSE54513	spe-9 OMA-1 IP rep1	fog-1 OMA-1 IP rep1
GSE23528A.s1t4.vs.s0t4	463	0.05	GSE23528	Adult at T14 in LD, time-series experiment 3	Adult at T14, non-entrained control time-series experiment 4
GSE2180.s2t3.vs.s2t1	583	0.05	GSE2180	ms41-1	ms0-1

Negative SVE Contrasts:

	Contrast.Num	SVE	GEO.GSE	Cond.1	Cond.2	Mutation
GSE16975.s1t1.vs.s0t1	643	-0.17	GSE16975	C.elegans hydrogen sulfide sample replicate 1	C.elegans control sample replicate 1
GSE41366A.s1t2.vs.s0t2	257	-0.15	GSE41366	low_DDVP-2h_expose-14h_harvest-rep1	control-2h_expose-14h_harvest-rep1
GSE35360B.s1t1.vs.s0t1	369	-0.09	GSE35360	HF 3d_0.2_rep1	HF 3d control_rep1
GSE35360B.s2t1.vs.s0t1	370	-0.05	GSE35360	HF 3d_2.0_rep1	HF 3d control_rep1
GSE15159.s2t2.vs.s0t2	664	-0.04	GSE15159	xpa-1_UV_2007_rep1	N2_UV_2007_rep1	xpa-1

\(~\)

Contrast SVE, Up-Regulated Genes Only:

Calculating SVE for up-regulated and down-regulated genes separately may be more informative in many cases than projecting the up- and down- gene sets together. This is due to the fact that the weight distribution of many modules is highly skewed, indicating that only one of the hemi-modules may be biologically meaningful (i.e., a set of genes are strongly correlated by only a few genes (or none) are strongly anti-correlated to that set.)

Positive SVE Contrasts:

	Contrast.Num	SVE	GEO.GSE	Cond.1	Cond.2	Mutation
GSE23528A.s1t1.vs.s0t1	467	0.21	GSE23528	Adult at T2 in LD, time-series experiment 3	Adult at T2, non-entrained control time-series experiment 4
GSE12298B.s1t1.vs.s0t1	683	0.20	GSE12298	fenamiphos_low_dose-rep1	fenamiphos_control-rep1
GSE28494.s1t2.vs.s0t2	421	0.20	GSE28494	lin-54(n3423) dissected germline 1	wild-type N2 dissected germline 1	lin-54
GSE41366B.s0t2.vs.s0t1	279	0.16	GSE41366	control-8h_expose-20h_harvest-rep1	control-8h_expose-14h_harvest-rep1
GSE41366B.s1t1.vs.s0t1	274	0.11	GSE41366	low_DDVP-8h_expose-14h_harvest-rep1	control-8h_expose-14h_harvest-rep1
GSE23528A.s1t6.vs.s0t6	469	0.11	GSE23528	Adult at T22 in LD, time-series experiment 3	Adult at T22, non-entrained control time-series experiment 4
GSE23528A.s1t3.vs.s0t3	461	0.11	GSE23528	Adult at T10 in LD, time-series experiment 3	Adult at T10, non-entrained control time-series experiment 4
GSE23528A.s1t5.vs.s0t5	465	0.11	GSE23528	Adult at T18 in LD, time-series experiment 3	Adult at T18, non-entrained control time-series experiment 4
GSE42592C.s3t3.vs.s3t2	245	0.10	GSE42592	mercury_high_expose-8h_rep1	mercury_high_expose-4h_rep1
GSE23528A.s1t4.vs.s0t4	463	0.09	GSE23528	Adult at T14 in LD, time-series experiment 3	Adult at T14, non-entrained control time-series experiment 4
GSE23528A.s1t2.vs.s1t1	477	0.09	GSE23528	Adult at T6 in LD, time-series experiment 3	Adult at T2 in LD, time-series experiment 3
GSE54513.s4t1.vs.s2t1	109	0.09	GSE54513	spe-9 OMA-1 IP rep1	fog-1 OMA-1 IP rep1
GSE23528A.s0t4.vs.s0t1	484	0.08	GSE23528	Adult at T14, non-entrained control time-series experiment 4	Adult at T2, non-entrained control time-series experiment 4
GSE23528A.s1t6.vs.s1t1	476	0.08	GSE23528	Adult at T22 in LD, time-series experiment 3	Adult at T2 in LD, time-series experiment 3
GSE16405.s4t1.vs.s3t1	654	0.07	GSE16405	xpa-1_1	nth-1;xpa-1_1	nth-1
GSE23528A.s1t3.vs.s1t1	473	0.07	GSE23528	Adult at T10 in LD, time-series experiment 3	Adult at T2 in LD, time-series experiment 3
GSE23528A.s2t5.vs.s0t5	466	0.07	GSE23528	Adult at T18 in WC, time-series experiment 1	Adult at T18, non-entrained control time-series experiment 4
GSE16405.s4t1.vs.s1t1	651	0.07	GSE16405	xpa-1_1	N2_1	xpa-1
GSE23528A.s0t3.vs.s0t1	483	0.07	GSE23528	Adult at T10, non-entrained control time-series experiment 4	Adult at T2, non-entrained control time-series experiment 4
GSE15159.s0t2.vs.s0t1	666	0.07	GSE15159	N2_UV_2007_rep1	N2_control_2007_rep1
GSE9665.s6t2.vs.s0t2	27	0.06	GSE9665	mex-3 nhr-25 186 A	mex-3 186 A	nhr-25
GSE41366A.s2t2.vs.s0t2	256	0.06	GSE41366	high_DDVP-2h_expose-14h_harvest-rep1	control-2h_expose-14h_harvest-rep1
GSE5801.s3t1.vs.s1t1	93	0.06	GSE5801	daf2pmk1_RepA	daf2_RepA	pmk-1
GSE23528A.s0t2.vs.s0t1	487	0.06	GSE23528	Adult at T6, non-entrained control time-series experiment 4	Adult at T2, non-entrained control time-series experiment 4
GSE9665.s9t1.vs.s0t1	20	0.06	GSE9665	mex-3 scrt-1 143 A	mex-3 143 A	scrt-1
GSE43959.s1t2.vs.s1t1	202	0.06	GSE43959	N2 gravid adult on E. coli OP50 rep 1	N2 young adult on E. coli OP50 rep 1
GSE2180.s1t2.vs.s1t1	573	0.05	GSE2180	23-1	00B
GSE2180.s2t3.vs.s2t1	583	0.05	GSE2180	ms41-1	ms0-1
GSE43959.s1t2.vs.s4t2	199	0.05	GSE43959	N2 gravid adult on E. coli OP50 rep 1	N2 gravid adult on 1:1000 Comamonas DA1877 rep 1
GSE23528A.s1t4.vs.s1t1	474	0.05	GSE23528	Adult at T14 in LD, time-series experiment 3	Adult at T2 in LD, time-series experiment 3

Negative SVE Contrasts:

	Contrast.Num	SVE	GEO.GSE	Cond.1	Cond.2	Mutation
GSE41366A.s1t2.vs.s0t2	257	-0.04	GSE41366	low_DDVP-2h_expose-14h_harvest-rep1	control-2h_expose-14h_harvest-rep1
GSE16975.s1t1.vs.s0t1	643	-0.02	GSE16975	C.elegans hydrogen sulfide sample replicate 1	C.elegans control sample replicate 1
GSE41366C.s1t3.vs.s0t3	294	-0.02	GSE41366	low_DDVP-continuous_expose-14h_harvest-rep1	control-continuous_expose-8h_harvest-rep1
GSE41366A.s1t2.vs.s1t1	270	-0.02	GSE41366	low_DDVP-2h_expose-14h_harvest-rep1	low_DDVP-2h_expose-8h_harvest-rep1
GSE35360B.s1t1.vs.s0t1	369	-0.02	GSE35360	HF 3d_0.2_rep1	HF 3d control_rep1

\(~\)

Contrast SVE, Down-Regulated Genes Only:

Positive SVE Contrasts:

	Contrast.Num	SVE	GEO.GSE	Cond.1	Cond.2	Mutation
GSE12298B.s1t1.vs.s0t1	683	0.06	GSE12298	fenamiphos_low_dose-rep1	fenamiphos_control-rep1
GSE41366B.s1t1.vs.s0t1	274	0.05	GSE41366	low_DDVP-8h_expose-14h_harvest-rep1	control-8h_expose-14h_harvest-rep1
GSE41366B.s2t1.vs.s0t1	273	0.04	GSE41366	high_DDVP-8h_expose-14h_harvest-rep1	control-8h_expose-14h_harvest-rep1
GSE12298B.s3t1.vs.s0t1	682	0.03	GSE12298	fenamiphos_high_dose-rep1	fenamiphos_control-rep1
GSE23528A.s1t1.vs.s0t1	467	0.03	GSE23528	Adult at T2 in LD, time-series experiment 3	Adult at T2, non-entrained control time-series experiment 4

Negative SVE Contrasts:

	Contrast.Num	SVE	GEO.GSE	Cond.1	Cond.2	Mutation
GSE41366A.s1t2.vs.s0t2	257	-0.31	GSE41366	low_DDVP-2h_expose-14h_harvest-rep1	control-2h_expose-14h_harvest-rep1
GSE16975.s1t1.vs.s0t1	643	-0.31	GSE16975	C.elegans hydrogen sulfide sample replicate 1	C.elegans control sample replicate 1
GSE35360B.s1t1.vs.s0t1	369	-0.15	GSE35360	HF 3d_0.2_rep1	HF 3d control_rep1
GSE35360B.s2t1.vs.s0t1	370	-0.08	GSE35360	HF 3d_2.0_rep1	HF 3d control_rep1
GSE12298C.s1t1.vs.s0t1	686	-0.06	GSE12298	mefloquine_low_dose-rep1	mefloquine_control-rep1
GSE15159.s2t2.vs.s0t2	664	-0.06	GSE15159	xpa-1_UV_2007_rep1	N2_UV_2007_rep1	xpa-1
GSE19310A.s1t1.vs.s0t1	628	-0.06	GSE19310	osm-11(n1604) at iso, rep1	N2 at iso, rep1	osm-11
GSE16405.s3t1.vs.s2t1	652	-0.06	GSE16405	nth-1;xpa-1_1	nth-1_1	xpa-1
GSE2180.s4t4.vs.s3t4	556	-0.05	GSE2180	pp53-1	p53-2
GSE19310A.s3t1.vs.s0t1	630	-0.05	GSE19310	osm-8(n1518) at iso, rep1	N2 at iso, rep1	osm-8

\(~\)

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GO Term Enrichment:

This analysis tests each hemi-module for enrichment of specific GO terms. Only gene-level annotations (e.g., as would be found on the gene’s page in Wormbase) are tested - the hierarchical structure of the GO ontology is not taken into account.

Note: At least the top two most enriched terms from each GO domain (BP/MF/CC) are shown, even when not statistically significant.

Enriched GO terms: Hemi-module A

ID	GO.Term	GO Domain	Raw p-value	Adj p-value
GO_0006281	DNA repair	BP	4.97e-21	1.81e-17
GO_0006974	cellular response to DNA damage stimulus	BP	2.38e-15	4.34e-12
GO_0007049	cell cycle	BP	3.15e-09	3.82e-06
GO_0051321	meiotic cell cycle	BP	1.60e-08	1.45e-05
GO_0000070	mitotic sister chromatid segregation	BP	9.97e-08	6.65e-05
GO_0006310	DNA recombination	BP	1.10e-07	6.65e-05
GO_0007186	G protein-coupled receptor signaling pathway	BP	1.97e-07	1.03e-04
GO_0051301	cell division	BP	2.85e-07	1.30e-04
GO_0040027	negative regulation of vulval development	BP	3.45e-07	1.39e-04
GO_0002119	nematode larval development	BP	3.81e-07	1.39e-04
GO_0006397	mRNA processing	BP	9.70e-07	3.21e-04
GO_0007059	chromosome segregation	BP	2.11e-06	6.41e-04
GO_0051276	chromosome organization	BP	2.95e-06	8.06e-04
GO_0032508	DNA duplex unwinding	BP	3.10e-06	8.06e-04
GO_0006260	DNA replication	BP	5.46e-06	1.33e-03
GO_0106074	aminoacyl-tRNA metabolism involved in translational fidelity	BP	6.45e-06	1.47e-03
GO_0030422	production of siRNA involved in RNA interference	BP	7.76e-06	1.66e-03
GO_0090305	nucleic acid phosphodiester bond hydrolysis	BP	9.10e-06	1.84e-03
GO_0006396	RNA processing	BP	1.25e-05	2.40e-03
GO_0000724	double-strand break repair via homologous recombination	BP	1.60e-05	2.92e-03
GO_0007076	mitotic chromosome condensation	BP	2.30e-05	3.81e-03
GO_0031048	chromatin silencing by small RNA	BP	2.30e-05	3.81e-03
GO_0000398	mRNA splicing, via spliceosome	BP	2.66e-05	4.22e-03
GO_0016246	RNA interference	BP	3.18e-05	4.82e-03
GO_0090501	RNA phosphodiester bond hydrolysis	BP	3.72e-05	5.42e-03
GO_0006287	base-excision repair, gap-filling	BP	4.57e-05	6.16e-03
GO_0016476	regulation of embryonic cell shape	BP	4.57e-05	6.16e-03
GO_0000003	reproduction	BP	5.00e-05	6.50e-03
GO_0016567	protein ubiquitination	BP	1.01e-04	1.27e-02
GO_0007155	cell adhesion	BP	1.22e-04	1.48e-02
GO_0006351	transcription, DNA-templated	BP	1.37e-04	1.61e-02
GO_0009792	embryo development ending in birth or egg hatching	BP	1.48e-04	1.69e-02
GO_0007064	mitotic sister chromatid cohesion	BP	1.77e-04	1.74e-02
GO_0001172	transcription, RNA-templated	BP	1.78e-04	1.74e-02
GO_0006297	nucleotide-excision repair, DNA gap filling	BP	1.78e-04	1.74e-02
GO_0070919	production of siRNA involved in chromatin silencing by small RNA	BP	1.78e-04	1.74e-02
GO_0000712	resolution of meiotic recombination intermediates	BP	1.81e-04	1.74e-02
GO_0006383	transcription by RNA polymerase III	BP	1.81e-04	1.74e-02
GO_0030334	regulation of cell migration	BP	2.29e-04	2.14e-02
GO_0010172	embryonic body morphogenesis	BP	2.92e-04	2.66e-02
GO_0030261	chromosome condensation	BP	3.35e-04	2.98e-02
GO_0030242	autophagy of peroxisome	BP	4.33e-04	3.66e-02
GO_0006261	DNA-dependent DNA replication	BP	4.38e-04	3.66e-02
GO_0000723	telomere maintenance	BP	4.42e-04	3.66e-02
GO_0000122	negative regulation of transcription by RNA polymerase II	BP	4.92e-04	3.92e-02
GO_0007275	multicellular organism development	BP	4.95e-04	3.92e-02
GO_0008380	RNA splicing	BP	5.46e-04	4.23e-02
GO_0051028	mRNA transport	BP	5.72e-04	4.34e-02
GO_0055114	oxidation-reduction process	BP	6.11e-04	4.54e-02
GO_0071897	DNA biosynthetic process	BP	6.39e-04	4.66e-02
GO_0042147	retrograde transport, endosome to Golgi	BP	7.29e-04	5.21e-02
GO_0031054	pre-miRNA processing	BP	8.42e-04	5.48e-02
GO_0036092	phosphatidylinositol-3-phosphate biosynthetic process	BP	8.42e-04	5.48e-02
GO_0040022	feminization of hermaphroditic germ-line	BP	8.42e-04	5.48e-02
GO_0048193	Golgi vesicle transport	BP	8.42e-04	5.48e-02
GO_1904810	negative regulation of dense core granule transport	BP	8.42e-04	5.48e-02
GO_0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	BP	1.22e-03	6.57e-02
GO_0045292	mRNA cis splicing, via spliceosome	BP	1.22e-03	6.57e-02
GO_0000390	spliceosomal complex disassembly	BP	1.28e-03	6.57e-02
GO_0001682	tRNA 5’-leader removal	BP	1.28e-03	6.57e-02
GO_0006429	leucyl-tRNA aminoacylation	BP	1.28e-03	6.57e-02
GO_0016322	neuron remodeling	BP	1.28e-03	6.57e-02
GO_0030702	chromatin silencing at centromere	BP	1.28e-03	6.57e-02
GO_0045004	DNA replication proofreading	BP	1.28e-03	6.57e-02
GO_0045814	negative regulation of gene expression, epigenetic	BP	1.28e-03	6.57e-02
GO_0048017	inositol lipid-mediated signaling	BP	1.28e-03	6.57e-02
GO_0051567	histone H3-K9 methylation	BP	1.28e-03	6.57e-02
GO_0071456	cellular response to hypoxia	BP	1.28e-03	6.57e-02
GO_0071596	ubiquitin-dependent protein catabolic process via the N-end rule pathway	BP	1.28e-03	6.57e-02
GO_0098887	neurotransmitter receptor transport, endosome to postsynaptic membrane	BP	1.28e-03	6.57e-02
GO_1903298	negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway	BP	1.28e-03	6.57e-02
GO_0015031	protein transport	BP	1.52e-03	7.70e-02
GO_0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	BP	1.59e-03	7.96e-02
GO_1901076	positive regulation of engulfment of apoptotic cell	BP	1.62e-03	7.97e-02
GO_0006418	tRNA aminoacylation for protein translation	BP	2.03e-03	9.87e-02
GO_0006811	ion transport	BP	2.09e-03	9.93e-02
GO_0048598	embryonic morphogenesis	BP	2.13e-03	9.93e-02
GO_0006491	N-glycan processing	BP	2.23e-03	9.93e-02
GO_0031032	actomyosin structure organization	BP	2.23e-03	9.93e-02
GO_0043044	ATP-dependent chromatin remodeling	BP	2.23e-03	9.93e-02
GO_1903507	negative regulation of nucleic acid-templated transcription	BP	2.23e-03	9.93e-02
GO_1904811	positive regulation of dense core granule transport	BP	2.23e-03	9.93e-02
GO_0005524	ATP binding	MF	4.47e-23	9.13e-20
GO_0004386	helicase activity	MF	6.26e-18	6.39e-15
GO_0000166	nucleotide binding	MF	4.03e-14	2.74e-11
GO_0003676	nucleic acid binding	MF	2.67e-12	1.37e-09
GO_0003677	DNA binding	MF	2.54e-10	1.04e-07
GO_0003723	RNA binding	MF	1.04e-08	3.54e-06
GO_0016779	nucleotidyltransferase activity	MF	6.41e-08	1.87e-05
GO_0005515	protein binding	MF	1.50e-06	3.83e-04
GO_0003714	transcription corepressor activity	MF	3.10e-06	7.03e-04
GO_0032266	phosphatidylinositol-3-phosphate binding	MF	4.80e-06	9.80e-04
GO_0002161	aminoacyl-tRNA editing activity	MF	6.45e-06	1.20e-03
GO_0003682	chromatin binding	MF	1.82e-05	3.11e-03
GO_0003678	DNA helicase activity	MF	2.62e-05	4.12e-03
GO_0032549	ribonucleoside binding	MF	4.57e-05	6.66e-03
GO_0003724	RNA helicase activity	MF	7.17e-05	9.77e-03
GO_0003887	DNA-directed DNA polymerase activity	MF	8.82e-05	1.13e-02
GO_0003968	RNA-directed 5’-3’ RNA polymerase activity	MF	1.78e-04	2.02e-02
GO_0016817	hydrolase activity, acting on acid anhydrides	MF	1.78e-04	2.02e-02
GO_0016787	hydrolase activity	MF	3.86e-04	3.97e-02
GO_0016887	ATPase activity	MF	3.89e-04	3.97e-02
GO_0003899	DNA-directed 5’-3’ RNA polymerase activity	MF	5.83e-04	5.67e-02
GO_0016491	oxidoreductase activity	MF	6.11e-04	5.68e-02
GO_0030983	mismatched DNA binding	MF	8.42e-04	7.46e-02
GO_0004518	nuclease activity	MF	8.76e-04	7.46e-02
GO_0003729	mRNA binding	MF	9.28e-04	7.58e-02
GO_0004812	aminoacyl-tRNA ligase activity	MF	9.93e-04	7.80e-02
GO_0005096	GTPase activator activity	MF	1.25e-03	9.02e-02
GO_0004823	leucine-tRNA ligase activity	MF	1.28e-03	9.02e-02
GO_0016891	endoribonuclease activity, producing 5’-phosphomonoesters	MF	1.28e-03	9.02e-02
GO_0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	MF	1.43e-03	9.45e-02
GO_0045505	dynein intermediate chain binding	MF	1.43e-03	9.45e-02
GO_0016021	integral component of membrane	CC	5.66e-41	5.25e-38
GO_0016020	membrane	CC	1.51e-34	6.98e-32
GO_0005634	nucleus	CC	1.47e-26	4.56e-24
GO_0005694	chromosome	CC	1.11e-09	2.58e-07
GO_0005730	nucleolus	CC	1.67e-08	3.09e-06
GO_0005887	integral component of plasma membrane	CC	7.25e-06	9.15e-04
GO_0031380	nuclear RNA-directed RNA polymerase complex	CC	7.89e-06	9.15e-04
GO_0031931	TORC1 complex	CC	7.89e-06	9.15e-04
GO_0000794	condensed nuclear chromosome	CC	1.25e-05	1.29e-03
GO_0000775	chromosome, centromeric region	CC	1.60e-05	1.49e-03
GO_0000228	nuclear chromosome	CC	2.23e-05	1.88e-03
GO_0000785	chromatin	CC	2.62e-05	2.03e-03
GO_0000776	kinetochore	CC	3.03e-05	2.16e-03
GO_0016604	nuclear body	CC	1.01e-04	6.72e-03
GO_0000938	GARP complex	CC	1.78e-04	1.10e-02
GO_0005912	adherens junction	CC	2.02e-04	1.11e-02
GO_0005643	nuclear pore	CC	2.03e-04	1.11e-02
GO_0005681	spliceosomal complex	CC	3.47e-04	1.78e-02
GO_0005576	extracellular region	CC	3.65e-04	1.78e-02
GO_0016581	NuRD complex	CC	4.33e-04	1.91e-02
GO_0046536	dosage compensation complex	CC	4.33e-04	1.91e-02
GO_0005615	extracellular space	CC	5.13e-04	2.16e-02
GO_0005623	cell	CC	6.21e-04	2.50e-02
GO_0005654	nucleoplasm	CC	6.67e-04	2.58e-02
GO_0005737	cytoplasm	CC	7.09e-04	2.63e-02
GO_0031422	RecQ helicase-Topo III complex	CC	1.28e-03	4.10e-02
GO_0032116	SMC loading complex	CC	1.28e-03	4.10e-02
GO_0070209	ASTRA complex	CC	1.28e-03	4.10e-02
GO_1990316	Atg1/ULK1 kinase complex	CC	1.28e-03	4.10e-02
GO_0030686	90S preribosome	CC	1.43e-03	4.29e-02
GO_0031932	TORC2 complex	CC	1.43e-03	4.29e-02
GO_0031965	nuclear membrane	CC	2.03e-03	5.76e-02
GO_0005938	cell cortex	CC	2.18e-03	5.76e-02
GO_0000145	exocyst	CC	2.23e-03	5.76e-02
GO_0001891	phagocytic cup	CC	2.23e-03	5.76e-02
GO_0035097	histone methyltransferase complex	CC	2.23e-03	5.76e-02
GO_0000784	nuclear chromosome, telomeric region	CC	2.67e-03	6.69e-02
GO_0030139	endocytic vesicle	CC	3.26e-03	7.97e-02
GO_0000793	condensed chromosome	CC	3.58e-03	8.28e-02
GO_0000796	condensin complex	CC	3.75e-03	8.28e-02
GO_0005798	Golgi-associated vesicle	CC	3.75e-03	8.28e-02
GO_0032045	guanyl-nucleotide exchange factor complex	CC	3.75e-03	8.28e-02
GO_0000777	condensed chromosome kinetochore	CC	4.53e-03	9.36e-02
GO_0005774	vacuolar membrane	CC	4.54e-03	9.36e-02
GO_0019898	extrinsic component of membrane	CC	4.54e-03	9.36e-02

Enriched GO terms: Hemi-module B

ID	GO.Term	GO Domain	Raw p-value	Adj p-value
GO_0035279	mRNA cleavage involved in gene silencing by miRNA	BP	1.50e-03	1.00e+00
GO_0070922	small RNA loading onto RISC	BP	1.50e-03	1.00e+00
GO_0004363	glutathione synthase activity	MF	7.48e-04	7.64e-01
GO_0016892	endoribonuclease activity, producing 3’-phosphomonoesters	MF	1.50e-03	7.64e-01
GO_0031588	nucleotide-activated protein kinase complex	CC	2.24e-03	1.00e+00
GO_0005730	nucleolus	CC	4.40e-03	1.00e+00

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---

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Tissue Enrichment:

This analysis tests each hemi-module for enrichment of genes associated with anatomy terms. Negative enrichment scores indicate fewer hemi-module genes than expected by random chance were associated with the anatomy term in question.

Enriched tissues: Hemi-module A

ID	Anatomy.Term	Definition	Raw p-value	Adj p-value
WBbt_0005784	germ line	cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes.	3.56e-05	6.93e-02
WBbt_0008112	P3.p hermaphrodite	descendent cell of post-embryonic blast cell P3, posterior in hermaphrodite.	9.82e-05	6.93e-02
WBbt_0008117	P4.p hermaphrodite	descendent cell of post-embryonic blast cell P4, posterior, in hermaphrodite.	9.82e-05	6.93e-02
WBbt_0008133	P8.p hermaphrodite		1.14e-04	6.93e-02
WBbt_0008121	P5.p hermaphrodite	descendent cell of post-embryonic blast cell P5, posterior, in hermaphrodite.	1.75e-04	8.11e-02
WBbt_0008129	P7.p hermaphrodite		2.00e-04	8.11e-02
WBbt_0008125	P6.p hermaphrodite		2.61e-04	9.06e-02

Enriched tissues: Hemi-module B

No significant annotations.

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HOMER promoter motif enrichment:

This analysis tests each hemi-module for enrichment of 108 known C. elegans transcription factor binding site motifs (see 108 CE motifs) using the HOMER (Hypergeometric Optimization of Motif EnRichment) software (see PMID:20513432). HOMER was run using default parameters on sequences 1 kb upstream of the transcription start site.

Motif enrichment: Hemi-module A

Total target sequences = 466
Total background sequences = 39541
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-16	-3.724e+01	62.88%	43.58%	277.1bp (346.4bp)	DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer(0.753) More Information | Similar Motifs Found	motif file (matrix)
2		1e-13	-3.186e+01	25.11%	12.08%	283.4bp (332.6bp)	eor-1/MA0543.1/Jaspar(0.714) More Information | Similar Motifs Found	motif file (matrix)
3		1e-13	-3.178e+01	48.50%	31.38%	283.7bp (338.4bp)	blmp-1/MA0537.1/Jaspar(0.614) More Information | Similar Motifs Found	motif file (matrix)
4		1e-13	-3.131e+01	47.00%	30.15%	295.8bp (319.6bp)	MF0005.1_Forkhead_class/Jaspar(0.790) More Information | Similar Motifs Found	motif file (matrix)
5		1e-13	-3.127e+01	10.52%	2.88%	282.2bp (339.6bp)	POL008.1_DCE_S_I/Jaspar(0.619) More Information | Similar Motifs Found	motif file (matrix)
6		1e-13	-3.027e+01	4.08%	0.36%	273.4bp (336.8bp)	MF0010.1_Homeobox_class/Jaspar(0.619) More Information | Similar Motifs Found	motif file (matrix)
7		1e-12	-2.906e+01	10.94%	3.29%	287.1bp (333.5bp)	LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer(0.703) More Information | Similar Motifs Found	motif file (matrix)
8		1e-12	-2.881e+01	5.58%	0.86%	238.0bp (323.0bp)	GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer(0.498) More Information | Similar Motifs Found	motif file (matrix)
9		1e-12	-2.853e+01	4.72%	0.59%	284.9bp (352.4bp)	fkh-9/MA1440.1/Jaspar(0.692) More Information | Similar Motifs Found	motif file (matrix)
10 *		1e-11	-2.654e+01	2.58%	0.12%	202.2bp (325.1bp)	EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer(0.625) More Information | Similar Motifs Found	motif file (matrix)
11 *		1e-11	-2.607e+01	21.24%	10.31%	282.5bp (330.0bp)	POL009.1_DCE_S_II/Jaspar(0.638) More Information | Similar Motifs Found	motif file (matrix)
12 *		1e-11	-2.595e+01	66.09%	50.29%	289.1bp (314.1bp)	MF0010.1_Homeobox_class/Jaspar(0.606) More Information | Similar Motifs Found	motif file (matrix)
13 *		1e-11	-2.591e+01	8.80%	2.44%	275.4bp (325.3bp)	GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer(0.543) More Information | Similar Motifs Found	motif file (matrix)
14 *		1e-10	-2.489e+01	3.43%	0.33%	281.2bp (342.2bp)	PL0004.1_hlh-27/Jaspar(0.549) More Information | Similar Motifs Found	motif file (matrix)
15 *		1e-10	-2.344e+01	1.29%	0.01%	343.3bp (100.6bp)	lin-14/MA0261.1/Jaspar(0.670) More Information | Similar Motifs Found	motif file (matrix)
16 *		1e-9	-2.237e+01	7.08%	1.86%	228.7bp (312.5bp)	unc-86/MA0926.1/Jaspar(0.503) More Information | Similar Motifs Found	motif file (matrix)
17 *		1e-9	-2.204e+01	33.26%	20.72%	289.2bp (320.5bp)	pha-4/MA0546.1/Jaspar(0.655) More Information | Similar Motifs Found	motif file (matrix)
18 *		1e-9	-2.144e+01	6.22%	1.52%	230.7bp (317.6bp)	MF0001.1_ETS_class/Jaspar(0.612) More Information | Similar Motifs Found	motif file (matrix)
19 *		1e-9	-2.129e+01	23.82%	13.23%	277.5bp (319.4bp)	fkh-2/MA0920.1/Jaspar(0.680) More Information | Similar Motifs Found	motif file (matrix)
20 *		1e-9	-2.095e+01	24.03%	13.48%	288.7bp (339.7bp)	EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer(0.581) More Information | Similar Motifs Found	motif file (matrix)
21 *		1e-9	-2.091e+01	32.62%	20.50%	266.9bp (313.5bp)	fkh-9/MA1440.1/Jaspar(0.780) More Information | Similar Motifs Found	motif file (matrix)
22 *		1e-8	-1.992e+01	3.65%	0.54%	253.9bp (292.1bp)	POL003.1_GC-box/Jaspar(0.603) More Information | Similar Motifs Found	motif file (matrix)
23 *		1e-8	-1.949e+01	1.72%	0.06%	263.9bp (361.1bp)	ceh-22/MA0264.1/Jaspar(0.550) More Information | Similar Motifs Found	motif file (matrix)
24 *		1e-8	-1.900e+01	4.51%	0.91%	288.9bp (320.4bp)	ceh-38/MA1699.1/Jaspar(0.626) More Information | Similar Motifs Found	motif file (matrix)
25 *		1e-7	-1.826e+01	13.73%	6.39%	262.0bp (332.1bp)	lin-14/MA0261.1/Jaspar(0.582) More Information | Similar Motifs Found	motif file (matrix)
26 *		1e-7	-1.782e+01	15.88%	8.00%	286.5bp (334.9bp)	blmp-1/MA0537.1/Jaspar(0.768) More Information | Similar Motifs Found	motif file (matrix)
27 *		1e-7	-1.640e+01	15.02%	7.66%	255.7bp (315.0bp)	atf-7/MA1438.1/Jaspar(0.540) More Information | Similar Motifs Found	motif file (matrix)
28 *		1e-7	-1.621e+01	1.07%	0.02%	231.5bp (394.7bp)	POL008.1_DCE_S_I/Jaspar(0.506) More Information | Similar Motifs Found	motif file (matrix)
29 *		1e-6	-1.543e+01	11.80%	5.55%	262.5bp (337.4bp)	MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar(0.724) More Information | Similar Motifs Found	motif file (matrix)
30 *		1e-6	-1.393e+01	2.58%	0.40%	289.0bp (300.6bp)	PL0014.1_mxl-1::mdl-1/Jaspar(0.557) More Information | Similar Motifs Found	motif file (matrix)
31 *		1e-5	-1.361e+01	4.08%	1.06%	233.9bp (313.7bp)	MF0008.1_MADS_class/Jaspar(0.468) More Information | Similar Motifs Found	motif file (matrix)
32 *		1e-5	-1.346e+01	24.46%	15.90%	268.0bp (328.7bp)	elt-6/MA1439.1/Jaspar(0.591) More Information | Similar Motifs Found	motif file (matrix)
33 *		1e-5	-1.293e+01	2.79%	0.53%	238.3bp (310.7bp)	POL006.1_BREu/Jaspar(0.562) More Information | Similar Motifs Found	motif file (matrix)
34 *		1e-5	-1.169e+01	0.86%	0.02%	90.1bp (220.2bp)	MF0011.1_HMG_class/Jaspar(0.548) More Information | Similar Motifs Found	motif file (matrix)
35 *		1e-4	-1.134e+01	6.22%	2.51%	247.6bp (322.3bp)	blmp-1/MA0537.1/Jaspar(0.545) More Information | Similar Motifs Found	motif file (matrix)
36 *		1e-3	-8.968e+00	4.08%	1.50%	234.7bp (313.3bp)	unc-30/MA1443.1/Jaspar(0.826) More Information | Similar Motifs Found	motif file (matrix)

Motif enrichment: Hemi-module B

Total target sequences = 10
Total background sequences = 35885
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1 *		1e-7	-1.800e+01	30.00%	0.05%	274.5bp (267.1bp)	unc-86/MA0926.1/Jaspar(0.642) More Information | Similar Motifs Found	motif file (matrix)
2 *		1e-7	-1.784e+01	30.00%	0.05%	301.3bp (364.5bp)	PL0017.1_hlh-2::hlh-10/Jaspar(0.536) More Information | Similar Motifs Found	motif file (matrix)
3 *		1e-7	-1.708e+01	80.00%	7.46%	317.0bp (305.8bp)	POL007.1_BREd/Jaspar(0.559) More Information | Similar Motifs Found	motif file (matrix)
4 *		1e-6	-1.427e+01	50.00%	1.93%	233.6bp (318.6bp)	sma-4/MA0925.1/Jaspar(0.560) More Information | Similar Motifs Found	motif file (matrix)
5 *		1e-6	-1.399e+01	60.00%	4.07%	314.5bp (320.1bp)	MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar(0.695) More Information | Similar Motifs Found	motif file (matrix)
6 *		1e-5	-1.377e+01	30.00%	0.20%	292.6bp (291.4bp)	elt-2/MA1701.1/Jaspar(0.557) More Information | Similar Motifs Found	motif file (matrix)
7 *		1e-4	-1.101e+01	40.00%	1.70%	224.6bp (294.8bp)	POL013.1_MED-1/Jaspar(0.668) More Information | Similar Motifs Found	motif file (matrix)
8 *		1e-4	-1.052e+01	30.00%	0.61%	226.4bp (295.8bp)	che-1/MA0260.1/Jaspar(0.466) More Information | Similar Motifs Found	motif file (matrix)
9 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	POL013.1_MED-1/Jaspar(0.571) More Information | Similar Motifs Found	motif file (matrix)
10 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	PL0004.1_hlh-27/Jaspar(0.616) More Information | Similar Motifs Found	motif file (matrix)
11 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	POL010.1_DCE_S_III/Jaspar(0.595) More Information | Similar Motifs Found	motif file (matrix)
12 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	MF0004.1_Nuclear_Receptor_class/Jaspar(0.564) More Information | Similar Motifs Found	motif file (matrix)
13 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	elt-2/MA1701.1/Jaspar(0.594) More Information | Similar Motifs Found	motif file (matrix)
14 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer(0.659) More Information | Similar Motifs Found	motif file (matrix)
15 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	PL0011.1_hlh-2::hlh-4/Jaspar(0.598) More Information | Similar Motifs Found	motif file (matrix)
16 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	ceh-22/MA0264.1/Jaspar(0.559) More Information | Similar Motifs Found	motif file (matrix)
17 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	PL0011.1_hlh-2::hlh-4/Jaspar(0.603) More Information | Similar Motifs Found	motif file (matrix)
18 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	efl-1/MA0541.1/Jaspar(0.592) More Information | Similar Motifs Found	motif file (matrix)
19 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	lin-14/MA0261.1/Jaspar(0.531) More Information | Similar Motifs Found	motif file (matrix)
20 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	POL008.1_DCE_S_I/Jaspar(0.600) More Information | Similar Motifs Found	motif file (matrix)
21 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (79.9bp)	SD0003.1_at_AC_acceptor/Jaspar(0.666) More Information | Similar Motifs Found	motif file (matrix)
22 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer(0.550) More Information | Similar Motifs Found	motif file (matrix)
23 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (167.1bp)	pal-1/MA0924.1/Jaspar(0.544) More Information | Similar Motifs Found	motif file (matrix)
24 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (9.9bp)	fkh-9/MA1440.1/Jaspar(0.502) More Information | Similar Motifs Found	motif file (matrix)
25 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	SD0001.1_at_AC_acceptor/Jaspar(0.603) More Information | Similar Motifs Found	motif file (matrix)
26 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	SD0003.1_at_AC_acceptor/Jaspar(0.556) More Information | Similar Motifs Found	motif file (matrix)
27 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	elt-2/MA1701.1/Jaspar(0.597) More Information | Similar Motifs Found	motif file (matrix)
28 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (218.4bp)	POL010.1_DCE_S_III/Jaspar(0.469) More Information | Similar Motifs Found	motif file (matrix)
29 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	unc-62/MA0918.1/Jaspar(0.641) More Information | Similar Motifs Found	motif file (matrix)
30 *		1e-3	-8.182e+00	10.00%	0.00%	0.0bp (0.0bp)	ceh-22/MA0264.1/Jaspar(0.533) More Information | Similar Motifs Found	motif file (matrix)
31 *		1e-3	-7.684e+00	50.00%	7.59%	319.3bp (325.7bp)	MF0001.1_ETS_class/Jaspar(0.588) More Information | Similar Motifs Found	motif file (matrix)
32 *		1e-3	-7.569e+00	40.00%	4.16%	194.1bp (311.5bp)	PL0001.1_hlh-11/Jaspar(0.878) More Information | Similar Motifs Found	motif file (matrix)
33 *		1e-3	-7.489e+00	10.00%	0.00%	0.0bp (32.8bp)	unc-30/MA1443.1/Jaspar(0.597) More Information | Similar Motifs Found	motif file (matrix)
34 *		1e-3	-7.489e+00	10.00%	0.00%	0.0bp (0.0bp)	MF0008.1_MADS_class/Jaspar(0.532) More Information | Similar Motifs Found	motif file (matrix)
35 *		1e-3	-7.157e+00	80.00%	27.21%	275.3bp (340.1bp)	skn-1/MA0547.1/Jaspar(0.816) More Information | Similar Motifs Found	motif file (matrix)
36 *		1e-3	-7.084e+00	10.00%	0.01%	0.0bp (187.5bp)	lim-7/MA1441.1/Jaspar(0.684) More Information | Similar Motifs Found	motif file (matrix)
37 *		1e-3	-7.084e+00	10.00%	0.01%	0.0bp (333.1bp)	PL0016.1_ref-1/Jaspar(0.658) More Information | Similar Motifs Found	motif file (matrix)
38 *		1e-3	-7.084e+00	10.00%	0.01%	0.0bp (0.0bp)	POL006.1_BREu/Jaspar(0.741) More Information | Similar Motifs Found	motif file (matrix)
39 *		1e-3	-7.084e+00	10.00%	0.01%	0.0bp (216.2bp)	SD0001.1_at_AC_acceptor/Jaspar(0.559) More Information | Similar Motifs Found	motif file (matrix)
40 *		1e-3	-7.084e+00	10.00%	0.01%	0.0bp (200.0bp)	PL0007.1_mxl-3/Jaspar(0.492) More Information | Similar Motifs Found	motif file (matrix)
41 *		1e-3	-7.084e+00	10.00%	0.01%	0.0bp (253.7bp)	ceh-22/MA0264.1/Jaspar(0.571) More Information | Similar Motifs Found	motif file (matrix)
42 *		1e-2	-6.796e+00	10.00%	0.01%	0.0bp (133.3bp)	DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer(0.607) More Information | Similar Motifs Found	motif file (matrix)
43 *		1e-2	-6.796e+00	10.00%	0.01%	0.0bp (168.8bp)	POL001.1_MTE/Jaspar(0.589) More Information | Similar Motifs Found	motif file (matrix)
44 *		1e-2	-6.796e+00	10.00%	0.01%	0.0bp (193.3bp)	SD0003.1_at_AC_acceptor/Jaspar(0.591) More Information | Similar Motifs Found	motif file (matrix)
45 *		1e-2	-6.796e+00	10.00%	0.01%	0.0bp (148.9bp)	PL0004.1_hlh-27/Jaspar(0.719) More Information | Similar Motifs Found	motif file (matrix)
46 *		1e-2	-6.381e+00	40.00%	5.71%	424.6bp (353.9bp)	POL010.1_DCE_S_III/Jaspar(0.595) More Information | Similar Motifs Found	motif file (matrix)

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\(~\)

Promoter Word Enrichment:

This analysis tests each hemi-module for enrichment of specific promoter words. The list of promoter words tested was generated by running the MobyDick algorithm (see PMID:10944202) on the full set of C. elegans 2 Kbp promoters.

Enriched promoter words: Hemi-module A

Word	RC	Raw.p.value	Adj.p.value
TCGTC	GACGA	1.21e-08	6.34e-05
CGTCCTC	GAGGACG	3.76e-08	9.82e-05
ATCGAT	ATCGAT	4.80e-07	8.37e-04
TCGTT	AACGA	8.99e-07	1.18e-03
CGTTGT	ACAACG	1.44e-06	1.50e-03
ATGGGCGTATTG	CAATACGCCCAT	3.69e-06	3.22e-03
TCTGAA	TTCAGA	7.20e-06	5.38e-03
CGCG	CGCG	8.44e-06	5.50e-03
TCCTCG	CGAGGA	9.46e-06	5.50e-03
CCGTGTACTCC	GGAGTACACGG	1.35e-05	7.00e-03
TGTTTAT	ATAAACA	1.47e-05	7.00e-03
TGGGCGTATTGC	GCAATACGCCCA	1.63e-05	7.09e-03
TGCAATACGCCC	GGGCGTATTGCA	1.95e-05	7.57e-03
TCGTTT	AAACGA	2.03e-05	7.57e-03
TTGTTT	AAACAA	2.22e-05	7.75e-03
CGTTCG	CGAACG	3.40e-05	1.11e-02
GCCCCGCCCACA	TGTGGGCGGGGC	4.41e-05	1.24e-02
CTCTCTC	GAGAGAG	4.44e-05	1.24e-02
AGAGCG	CGCTCT	4.86e-05	1.24e-02
GGCCGTG	CACGGCC	5.14e-05	1.24e-02
TCGCT	AGCGA	5.18e-05	1.24e-02
TTCTCGT	ACGAGAA	5.24e-05	1.24e-02
GAGTTGG	CCAACTC	5.61e-05	1.28e-02
GCCCCGCCCAC	GTGGGCGGGGC	6.74e-05	1.47e-02
CCTCT	AGAGG	7.90e-05	1.65e-02
TTCGGGTCTC	GAGACCCGAA	1.05e-04	2.12e-02
CCTTC	GAAGG	1.16e-04	2.25e-02
AACTTAC	GTAAGTT	1.23e-04	2.30e-02
TATTTA	TAAATA	1.32e-04	2.32e-02
CGATCG	CGATCG	1.33e-04	2.32e-02
TTATTTTATT	AATAAAATAA	1.40e-04	2.36e-02
GCATCG	CGATGC	1.56e-04	2.36e-02
TCCGT	ACGGA	1.58e-04	2.36e-02
GTGGGCGGGGCC	GGCCCCGCCCAC	1.64e-04	2.36e-02
CGCACGC	GCGTGCG	1.67e-04	2.36e-02
CGTATT	AATACG	1.78e-04	2.36e-02
CTCTGC	GCAGAG	1.82e-04	2.36e-02
ACGAAAAGGGGA	TCCCCTTTTCGT	1.84e-04	2.36e-02
TCCTCT	AGAGGA	1.84e-04	2.36e-02
GATGAG	CTCATC	1.85e-04	2.36e-02
ACACG	CGTGT	1.87e-04	2.36e-02
GAAGAAGA	TCTTCTTC	1.89e-04	2.36e-02
TCTCTTC	GAAGAGA	1.98e-04	2.41e-02
ACACGA	TCGTGT	2.08e-04	2.47e-02
GCGC	GCGC	2.17e-04	2.49e-02
GACCCG	CGGGTC	2.19e-04	2.49e-02
ATCGA	TCGAT	2.25e-04	2.50e-02
TGTGGGCGGGGC	GCCCCGCCCACA	2.52e-04	2.73e-02
TCCTTC	GAAGGA	2.55e-04	2.73e-02
ACGAAGA	TCTTCGT	2.63e-04	2.73e-02
CGTCT	AGACG	2.69e-04	2.73e-02
AAGCAT	ATGCTT	2.71e-04	2.73e-02
GACCCGA	TCGGGTC	3.01e-04	2.97e-02
TTCTTC	GAAGAA	3.22e-04	3.12e-02
GCACGC	GCGTGC	3.64e-04	3.41e-02
TAAATA	TATTTA	3.65e-04	3.41e-02
GACGGAG	CTCCGTC	3.83e-04	3.44e-02
GTGCGC	GCGCAC	3.88e-04	3.44e-02
TTCCTC	GAGGAA	3.89e-04	3.44e-02
CGCCTC	GAGGCG	3.95e-04	3.45e-02
CCATTTC	GAAATGG	4.17e-04	3.57e-02
CGACG	CGTCG	4.71e-04	3.96e-02
TCGAAT	ATTCGA	4.82e-04	3.96e-02
CTCGTC	GACGAG	4.85e-04	3.96e-02
GAAAGAG	CTCTTTC	5.40e-04	4.28e-02
GTGGGCGGGGC	GCCCCGCCCAC	5.41e-04	4.28e-02
TCGAATT	AATTCGA	5.62e-04	4.39e-02
CGTCTC	GAGACG	5.88e-04	4.53e-02
CTGAA	TTCAG	6.08e-04	4.61e-02
AATAATT	AATTATT	6.28e-04	4.70e-02
TCTTCTTC	GAAGAAGA	6.54e-04	4.82e-02
CGTTGTC	GACAACG	7.02e-04	5.03e-02
TTTCTC	GAGAAA	7.02e-04	5.03e-02
ACTCCTCTCGGA	TCCGAGAGGAGT	7.12e-04	5.03e-02
AAACTTAC	GTAAGTTT	7.34e-04	5.07e-02
CGACGA	TCGTCG	7.36e-04	5.07e-02
CCCCGCCCAC	GTGGGCGGGG	7.50e-04	5.10e-02
GATGA	TCATC	7.82e-04	5.24e-02
GAACA	TGTTC	8.09e-04	5.36e-02
TCCTCTCG	CGAGAGGA	8.31e-04	5.44e-02
TAAACTTT	AAAGTTTA	8.81e-04	5.69e-02
GTCGT	ACGAC	9.02e-04	5.74e-02
TGCGCCTTTAA	TTAAAGGCGCA	9.21e-04	5.74e-02
TCTGAAAT	ATTTCAGA	9.22e-04	5.74e-02
GCAGCA	TGCTGC	1.00e-03	6.12e-02
TCTTCCTC	GAGGAAGA	1.01e-03	6.12e-02
CGAAAAGGGGAG	CTCCCCTTTTCG	1.02e-03	6.12e-02
CTCCTTC	GAAGGAG	1.08e-03	6.41e-02
GTCCGCAA	TTGCGGAC	1.11e-03	6.46e-02
CGAGACCCG	CGGGTCTCG	1.11e-03	6.46e-02
CATCTG	CAGATG	1.20e-03	6.69e-02
CACACAC	GTGTGTG	1.20e-03	6.69e-02
TCTCGTT	AACGAGA	1.23e-03	6.69e-02
TCCTC	GAGGA	1.23e-03	6.69e-02
GCCCCGCCCA	TGGGCGGGGC	1.23e-03	6.69e-02
TCCTTCT	AGAAGGA	1.24e-03	6.69e-02
ATAATT	AATTAT	1.26e-03	6.69e-02
AACGAT	ATCGTT	1.26e-03	6.69e-02
GCGGCAG	CTGCCGC	1.28e-03	6.69e-02
TGGGTCTCGT	ACGAGACCCA	1.28e-03	6.69e-02
CTGAAATA	TATTTCAG	1.32e-03	6.81e-02
TGGGCGGGGC	GCCCCGCCCA	1.41e-03	7.23e-02
CTCCCCTTTTCG	CGAAAAGGGGAG	1.46e-03	7.37e-02
AATAATA	TATTATT	1.47e-03	7.37e-02
ACTGCCGCACGG	CCGTGCGGCAGT	1.55e-03	7.52e-02
CTCGCTC	GAGCGAG	1.55e-03	7.52e-02
TCTGAAA	TTTCAGA	1.55e-03	7.52e-02
TCGCCTC	GAGGCGA	1.55e-03	7.52e-02
TCATCG	CGATGA	1.75e-03	8.34e-02
TCGGGTCTC	GAGACCCGA	1.75e-03	8.34e-02
GACATC	GATGTC	1.78e-03	8.37e-02
CGCGCG	CGCGCG	1.83e-03	8.53e-02
GCGCGC	GCGCGC	1.87e-03	8.64e-02
TCATCTTC	GAAGATGA	1.92e-03	8.78e-02
ACCGTGCGGCAG	CTGCCGCACGGT	1.94e-03	8.78e-02
CTCGT	ACGAG	1.98e-03	8.78e-02
ATTATTATT	AATAATAAT	1.98e-03	8.78e-02
ACGAG	CTCGT	1.98e-03	8.78e-02
AAAACTTAC	GTAAGTTTT	2.03e-03	8.94e-02
CCTTCTTC	GAAGAAGG	2.11e-03	9.17e-02
ACTTAC	GTAAGT	2.15e-03	9.28e-02
CTTCTTC	GAAGAAG	2.19e-03	9.38e-02
CGATGAG	CTCATCG	2.29e-03	9.75e-02
ATTATTT	AAATAAT	2.31e-03	9.75e-02
CGAATTC	GAATTCG	2.34e-03	9.78e-02
CGCCTTC	GAAGGCG	2.36e-03	9.78e-02
CTTCTTCTT	AAGAAGAAG	2.40e-03	9.83e-02

Enriched promoter words: Hemi-module B

No significant words.

\(~\)

---

\(~\)

Promoter Word Depletion:

This analysis tests each hemi-module for depletion (under-enrichment) of specific promoter words. The list of promoter words tested was generated by running the MobyDick algorithm (see PMID:10944202) on the full set of C. elegans 2 Kbp promoters.

Depleted promoter words: Hemi-module A

Word	RC	Raw.p.value	Adj.p.value
TTTTTTTTG	CAAAAAAAA	8.76e-06	2.31e-02
GCCTGCCT	AGGCAGGC	8.84e-06	2.31e-02
AATTTTGAA	TTCAAAATT	1.58e-05	2.75e-02
GGCAAATTG	CAATTTGCC	2.39e-05	2.75e-02
AATTTTGAAA	TTTCAAAATT	2.63e-05	2.75e-02
AAATTTTG	CAAAATTT	4.02e-05	2.97e-02
CGGAAATT	AATTTCCG	4.66e-05	2.97e-02
GTATAAAA	TTTTATAC	5.60e-05	2.97e-02
CCCC	GGGG	5.88e-05	2.97e-02
CCCCC	GGGGG	5.93e-05	2.97e-02
GGGG	CCCC	6.26e-05	2.97e-02
AAAGTA	TACTTT	9.10e-05	3.92e-02
TGCCTGC	GCAGGCA	1.11e-04	3.92e-02
TTGCCGA	TCGGCAA	1.11e-04	3.92e-02
TTTTGG	CCAAAA	1.12e-04	3.92e-02
CCCCTC	GAGGGG	1.31e-04	4.22e-02
TGCCTGCCT	AGGCAGGCA	1.40e-04	4.22e-02
CCAAAA	TTTTGG	1.51e-04	4.22e-02
TCAAATTTT	AAAATTTGA	1.53e-04	4.22e-02
CCAAAAA	TTTTTGG	1.74e-04	4.35e-02
TTTTGAAAA	TTTTCAAAA	1.75e-04	4.35e-02
CCTACC	GGTAGG	1.89e-04	4.50e-02
CTACAA	TTGTAG	2.11e-04	4.80e-02
CCGGAAA	TTTCCGG	2.28e-04	4.96e-02
AGTCTA	TAGACT	2.63e-04	5.35e-02
AAATTTTGA	TCAAAATTT	2.66e-04	5.35e-02
TTTTTTTTTG	CAAAAAAAAA	2.84e-04	5.50e-02
CAGGTA	TACCTG	3.57e-04	6.43e-02
TTCCGGCAAAT	ATTTGCCGGAA	3.73e-04	6.43e-02
TTTGCCGGAAA	TTTCCGGCAAA	3.82e-04	6.43e-02
AATTTTGAAAA	TTTTCAAAATT	3.84e-04	6.43e-02
AATTAAAAAAAA	TTTTTTTTAATT	3.95e-04	6.43e-02
GTAGGTC	GACCTAC	4.12e-04	6.43e-02
TTTCCGGCAAA	TTTGCCGGAAA	4.18e-04	6.43e-02
AAATCGGCAAA	TTTGCCGATTT	4.37e-04	6.54e-02
GCCGAAAA	TTTTCGGC	4.78e-04	6.94e-02
ATTAAAAAAAA	TTTTTTTTAAT	4.92e-04	6.95e-02
ACATTTT	AAAATGT	5.24e-04	7.21e-02
TATATGTA	TACATATA	5.50e-04	7.37e-02
TTGCCGG	CCGGCAA	6.24e-04	8.10e-02
AAATTTGA	TCAAATTT	6.55e-04	8.10e-02
TTAAAAAAAA	TTTTTTTTAA	6.65e-04	8.10e-02
AAATTTTCAA	TTGAAAATTT	6.66e-04	8.10e-02
TTGCCGGAA	TTCCGGCAA	7.29e-04	8.66e-02
ACCACTA	TAGTGGT	7.78e-04	8.99e-02
TTTGGTA	TACCAAA	7.91e-04	8.99e-02
GGTATA	TATACC	8.31e-04	9.25e-02
CGGCAAATT	AATTTGCCG	8.49e-04	9.25e-02
CAGGC	GCCTG	8.80e-04	9.25e-02
CTTAGGCT	AGCCTAAG	8.85e-04	9.25e-02
AAATTTTGAA	TTCAAAATTT	9.02e-04	9.25e-02
AAAATTTGA	TCAAATTTT	9.72e-04	9.77e-02

Depleted promoter words: Hemi-module B

No significant words.

\(~\)

---

\(~\)

3’-UTR Word Enrichment:

This analysis tests each hemi-module for enrichment of specific 3’-UTR words. The list of words tested was generated by running the MobyDick algorithm (see PMID:10944202) on the full set of C. elegans 3’-UTR sequences.

3’-UTR words: Hemi-module A

No significant words.

3’-UTR words: Hemi-module B

No significant words.

\(~\)

---

\(~\)

Hemi-module A genes

affy_c_elegans	ensembl_gene_id	external_gene_name	module_weight	chromosome_name	strand	start_position	end_position
188503_s_at	WBGene00006961	xnp-1	11.73	I	-1	4665744	4671738
189704_s_at	WBGene00000226	atl-1	10.18	V	-1	9634861	9645595
193153_s_at	WBGene00004296	rad-50	10.14	V	1	12245594	12251246
185604_s_at	WBGene00016650	ubr-4	10.08	I	-1	4610147	4633377
189122_s_at	WBGene00003472	mtk-1	9.95	I	-1	5795404	5801299
172042_x_at	WBGene00000226	atl-1	9.55	V	-1	9634861	9645595
183919_s_at	WBGene00001352	evl-14	9.28	III	-1	4303096	4313128
179200_at	WBGene00012121	T28C6.7	8.65	IV	1	8827802	8840682
193489_s_at	WBGene00010013	F54B3.1	8.44	II	1	10251266	10268168
177140_s_at	WBGene00000939	dcr-1	8.40	III	-1	8071916	8080281
187956_at	WBGene00004319	rbr-2	8.39	IV	1	10920075	10926807
193380_s_at	WBGene00010369	chd-1	8.35	I	-1	7009139	7015212
191368_s_at	WBGene00011696	eea-1	8.31	V	-1	13491068	13497372
190611_s_at	WBGene00004186	prpf-4	8.31	I	-1	7091309	7094537
179044_s_at	WBGene00008990	smgl-1	8.21	I	-1	7918443	7926338
174814_at	WBGene00010369	chd-1	8.18	I	-1	7009139	7015212
189477_s_at	WBGene00010284	aman-2	8.07	V	-1	11927661	11933246
193988_at	WBGene00008429	etc-1	8.01	II	1	8664833	8669154
189589_s_at	WBGene00007761	rad-26	7.99	IV	1	8894081	8901386
180778_at	WBGene00007050	utp-20	7.88	II	1	6536380	6554846
190233_s_at	WBGene00002223	klp-12	7.88	IV	-1	11341325	11359863
172064_x_at	WBGene00004323	rde-1	7.81	V	-1	9987916	9991642
182427_s_at	WBGene00004318	rbg-2	7.75	I	1	7962052	7972443
178112_at	WBGene00004510	rrf-3	7.71	II	1	8162465	8168644
180955_s_at	WBGene00002850	let-716	7.69	III	1	6383552	6389401
174987_at	WBGene00016120	C25H3.11	7.50	II	-1	5669788	5689030
189046_s_at	WBGene00004039	plc-4	7.46	IV	-1	7509479	7512667
174455_s_at	WBGene00003472	mtk-1	7.37	I	-1	5795404	5801299
175829_s_at	WBGene00004879	smg-1	7.15	I	-1	6900947	6913579
172670_x_at	WBGene00004508	rrf-1	7.12	I	-1	7643431	7649777
174605_at	WBGene00000911	daf-15	7.01	IV	1	9386208	9394930
177600_at	WBGene00004117	sin-3	6.98	I	1	8416831	8425042
182058_at	WBGene00016151	smc-5	6.95	II	1	5062129	5067116
181127_s_at	WBGene00015813	thoc-2	6.90	III	1	6368042	6373904
190056_at	WBGene00019004	xpg-1	6.89	I	1	6558696	6562346
193809_at	WBGene00009672	F43G9.12	6.88	I	1	8640508	8644399
180595_s_at	WBGene00015641	C09E7.7	6.84	III	-1	6546723	6551242
180595_s_at	WBGene00017849	F27B3.7	6.84	III	-1	6559097	6563666
193610_s_at	WBGene00006382	taf-1	6.84	I	1	13861472	13887468
189352_s_at	WBGene00000911	daf-15	6.83	IV	1	9386208	9394930
191768_at	WBGene00014165	puf-12	6.79	II	1	10100310	10103059
188599_s_at	WBGene00000839	cul-4	6.66	II	1	7302101	7305760
192676_s_at	WBGene00001259	emb-5	6.65	III	-1	4715293	4720670
178192_at	WBGene00010044	F54C9.9	6.62	II	1	8578049	8581513
174561_at	WBGene00004319	rbr-2	6.62	IV	1	10920075	10926807
189609_s_at	WBGene00000796	crn-3	6.59	II	1	10588042	10592652
188532_s_at	WBGene00020263	let-355	6.58	I	-1	5472321	5479438
174562_s_at	WBGene00004319	rbr-2	6.58	IV	1	10920075	10926807
188452_s_at	WBGene00001443	fli-1	6.57	III	-1	8675297	8683732
174977_at	WBGene00002583	let-363	6.51	I	1	5245743	5263413
173452_s_at	WBGene00004323	rde-1	6.50	V	-1	9987916	9991642
191080_s_at	WBGene00000419	ced-5	6.50	IV	1	10484110	10492952
181798_at	WBGene00016120	C25H3.11	6.46	II	-1	5669788	5689030
192886_s_at	WBGene00003074	lars-2	6.35	I	-1	7457153	7460756
183760_s_at	WBGene00001860	him-1	6.35	I	-1	4951570	4957667
174638_at	WBGene00004371	rig-4	6.33	IV	-1	7991410	8004136
174685_at	WBGene00012121	T28C6.7	6.33	IV	1	8827802	8840682
193951_at	WBGene00004315	rbd-1	6.32	IV	1	12724948	12730095
175649_s_at	WBGene00004508	rrf-1	6.30	I	-1	7643431	7649777
179141_at	WBGene00001653	gon-4	6.30	IV	1	10197820	10202993
188271_at	WBGene00002583	let-363	6.29	I	1	5245743	5263413
189712_s_at	WBGene00001017	dnc-1	6.28	IV	-1	10926730	10933203
188918_at	WBGene00009163	drsh-1	6.25	I	-1	9781338	9785722
182462_at	WBGene00020259	T05E7.3	6.23	I	1	6188157	6192632
179556_s_at	WBGene00020111	R151.8	6.16	III	-1	7226820	7229787
188509_s_at	WBGene00001284	emb-30	6.16	III	-1	9435083	9441539
179708_s_at	WBGene00017800	F25G6.9	6.15	V	-1	8565275	8570077
176820_at	WBGene00019883	met-2	6.13	III	1	8375300	8380833
173850_at	WBGene00011696	eea-1	6.13	V	-1	13491068	13497372
183889_s_at	WBGene00000101	aka-1	6.12	II	-1	7472729	7478959
192161_s_at	WBGene00003034	lin-49	6.10	IV	1	8620683	8626149
190980_at	WBGene00014066	rev-1	6.04	II	1	7900647	7904636
189493_at	WBGene00008400	drh-3	6.01	I	1	7820831	7826433
189789_s_at	WBGene00004378	rme-8	6.01	I	1	8083583	8095574
184848_at	WBGene00017642	F20D12.2	5.99	IV	1	7948643	7953548
177852_at	WBGene00013877	ZC376.6	5.93	V	1	14185691	14192156
178199_s_at	WBGene00010231	F58B3.4	5.92	IV	-1	11628757	11631850
175751_s_at	WBGene00003777	nmy-2	5.92	I	-1	7926623	7934577
188248_at	WBGene00015203	cdk-11.1	5.90	II	1	7699254	7702012
175416_at	WBGene00011975	T24B1.1	5.88	I	1	7676668	7679061
184109_s_at	WBGene00010056	smc-6	5.88	II	1	11578716	11582758
191433_s_at	WBGene00008502	skih-2	5.87	IV	-1	11135566	11142360
189340_at	WBGene00003393	mog-5	5.86	II	1	5399538	5405810
193794_s_at	WBGene00008107	aspm-1	5.85	I	-1	9221834	9226390
192069_s_at	WBGene00004874	smc-4	5.82	III	1	4587415	4593124
193514_at	WBGene00008646	F10C2.5	5.82	V	1	12045432	12048631
193315_s_at	WBGene00003389	mog-1	5.82	III	-1	9952056	9956271
188591_at	WBGene00020235	T05A12.4	5.78	IV	1	6887948	6897777
171759_x_at	WBGene00010676	ctf-18	5.77	IV	-1	10122120	10126675
174941_s_at	WBGene00013680	rpom-1	5.68	I	-1	14552030	14565853
185007_s_at	WBGene00017605	F19F10.9	5.67	V	-1	7571950	7575715
177740_s_at	WBGene00008887	tbcd-1	5.64	I	-1	8363954	8369917
193145_at	WBGene00012342	mtr-4	5.64	IV	1	9825694	9830620
190350_at	WBGene00014011	ZK632.2	5.63	III	1	9799107	9802333
193420_s_at	WBGene00000421	ced-7	5.63	III	-1	9570394	9580081
193703_s_at	WBGene00002173	itr-1	5.61	IV	1	7675174	7696923
190444_s_at	WBGene00011503	gcc-2	5.59	III	-1	9757616	9762143
189319_at	WBGene00010676	ctf-18	5.56	IV	-1	10122120	10126675
186696_at	WBGene00014014	ZK632.5	5.54	III	1	9808544	9812639
191813_s_at	WBGene00003777	nmy-2	5.51	I	-1	7926623	7934577
177563_s_at	WBGene00011333	nrde-2	5.50	II	-1	10242595	10247638
186870_s_at	WBGene00019168	H06I04.3	5.49	III	1	3070523	3085268
173857_at	WBGene00001259	emb-5	5.49	III	-1	4715293	4720670
175718_s_at	WBGene00001443	fli-1	5.48	III	-1	8675297	8683732
179476_at	WBGene00011109	R07E5.1	5.48	III	1	4408551	4412149
174411_s_at	WBGene00011348	T01H3.2	5.47	II	-1	7874242	7878097
183918_s_at	WBGene00020781	T24H7.2	5.46	II	1	6247311	6250841
173695_s_at	WBGene00011348	T01H3.2	5.43	II	-1	7874242	7878097
187204_at	WBGene00021831	Y54E10A.11	5.42	I	-1	3176419	3192857
193676_s_at	WBGene00002173	itr-1	5.42	IV	1	7675174	7696923
173468_at	WBGene00000101	aka-1	5.42	II	-1	7472729	7478959
189276_s_at	WBGene00007028	trr-1	5.39	II	-1	11661583	11675927
179935_at	WBGene00016170	tmem-131	5.37	III	-1	4991439	4998161
177111_at	WBGene00004881	smg-3	5.37	IV	-1	6362395	6373087
189907_s_at	WBGene00000962	dhc-1	5.32	I	1	4386785	4401980
186364_at	WBGene00018017	golg-2	5.32	II	-1	5036561	5040196
192744_at	WBGene00007912	C34B7.2	5.31	I	1	8336966	8341826
184481_at	WBGene00018508	F46F11.1	5.30	I	1	5627819	5637622
176963_at	WBGene00004371	rig-4	5.29	IV	-1	7991410	8004136
178777_s_at	WBGene00008430	hgap-2	5.22	II	-1	8669133	8684897
181777_at	WBGene00010620	K07A12.1	5.20	I	1	8666595	8669792
193889_at	WBGene00003367	mix-1	5.19	II	1	10824294	10841424
193889_at	WBGene00014447	M106.6	5.19	II	1	10840317	10840391
193747_s_at	WBGene00005015	spt-5	5.19	IV	1	12051484	12055785
188101_at	WBGene00006944	wrn-1	5.19	II	1	6554977	6559267
193835_s_at	WBGene00014218	ZK1098.1	5.18	III	1	9522075	9525437
191403_s_at	WBGene00011629	T08G11.1	5.17	I	-1	8905644	8916805
189165_s_at	WBGene00007514	catp-8	5.14	IV	-1	11473363	11479251
179905_at	WBGene00019629	cid-1	5.13	III	1	5173922	5180507
175793_s_at	WBGene00000421	ced-7	5.13	III	-1	9570394	9580081
188069_s_at	WBGene00001085	dpy-26	5.12	IV	-1	12445801	12451299
184356_s_at	WBGene00001090	drh-1	5.12	IV	-1	6607376	6613353
187252_s_at	WBGene00016194	C28H8.3	5.10	III	1	5908700	5914734
174523_s_at	WBGene00016391	lonp-1	5.09	I	-1	10676922	10682374
189574_s_at	WBGene00004879	smg-1	5.08	I	-1	6900947	6913579
187657_s_at	WBGene00022765	ZK546.14	5.08	II	-1	4944042	4945838
193122_at	WBGene00010502	K02C4.3	5.07	II	-1	8080789	8086849
188392_s_at	WBGene00003020	lin-35	5.06	I	1	5807709	5815637
185717_s_at	WBGene00017657	F21C10.7	5.06	V	1	9112767	9122180
171752_x_at	WBGene00015968	C18C4.7	5.05	V	-1	5550315	5567221
179766_s_at	WBGene00015640	C09E7.6	5.04	III	-1	6541550	6546425
179766_s_at	WBGene00015642	C09E7.8	5.04	III	-1	6553575	6558575
179584_at	WBGene00012234	W04A4.5	5.02	I	1	13663462	13674997
189860_s_at	WBGene00014114	tftc-3	5.01	V	-1	10206619	10210344
193255_at	WBGene00011436	T04F3.1	4.99	V	1	11740065	11754109
187804_s_at	WBGene00001584	nrde-4	4.98	IV	-1	7646200	7654262
193320_s_at	WBGene00013869	mlck-1	4.98	X	-1	10062451	10069783
193600_s_at	WBGene00004064	pms-2	4.97	V	-1	11566804	11573091
177969_at	WBGene00007577	nrde-1	4.95	III	1	3713463	3718745
193857_s_at	WBGene00003421	msh-5	4.95	IV	1	13155228	13164056
193575_s_at	WBGene00008800	F14E5.2	4.94	II	-1	8423951	8428855
176575_s_at	WBGene00022717	hipr-1	4.93	III	1	8720201	8725334
173670_s_at	WBGene00003800	npp-14	4.93	I	-1	9660174	9664915
189877_at	WBGene00019940	npp-21	4.92	II	1	7599657	7608014
174721_at	WBGene00004378	rme-8	4.92	I	1	8083583	8095574
189742_s_at	WBGene00003776	nmy-1	4.92	X	1	2909536	2918038
186609_s_at	WBGene00003060	lpd-3	4.91	I	-1	3565012	3600729
173483_s_at	WBGene00022598	ztf-8	4.89	III	-1	5268682	5273471
181858_s_at	WBGene00016582	vps-8	4.88	IV	-1	12270490	12275992
177180_s_at	WBGene00004881	smg-3	4.86	IV	-1	6362395	6373087
187366_s_at	WBGene00007008	rfp-1	4.86	III	1	8358625	8362496
188938_at	WBGene00017162	ddx-23	4.85	III	-1	5848838	5853269
174365_s_at	WBGene00020964	polq-1	4.83	III	-1	5791171	5803042
177646_at	WBGene00014087	ZK809.5	4.82	IV	1	11656730	11659425
192891_s_at	WBGene00011507	T05H10.1	4.81	II	1	8042589	8047452
175582_at	WBGene00004051	parg-1	4.81	IV	1	8746252	8752676
194029_s_at	WBGene00000396	cdh-4	4.81	III	1	4520363	4536991
190310_s_at	WBGene00006934	vps-54	4.80	V	-1	10566365	10576419
189129_at	WBGene00020498	T14B4.1	4.80	II	1	6736904	6741482
178342_s_at	WBGene00007505	pezo-1	4.79	IV	-1	9343358	9366506
192422_s_at	WBGene00002081	ina-1	4.79	III	-1	9168040	9172802
185091_at	WBGene00014965	Y106G6D.5	4.79	I	-1	10119209	10122171
175832_s_at	WBGene00001214	ego-1	4.78	I	-1	7650418	7656336
193005_s_at	WBGene00009267	usp-48	4.78	I	1	9506553	9511184
183622_s_at	WBGene00020819	T26A5.2	4.78	III	1	6467382	6471510
173662_at	WBGene00020263	let-355	4.77	I	-1	5472321	5479438
181020_at	WBGene00018900	rod-1	4.77	IV	1	7478171	7485523
176091_s_at	WBGene00004187	prp-8	4.74	III	1	8164373	8172702
178628_s_at	WBGene00004752	sec-5	4.72	II	-1	9173175	9177152
187321_s_at	WBGene00022463	elpc-1	4.72	I	-1	5114119	5118852
188636_at	WBGene00019884	R05D3.12	4.72	III	1	8380943	8387529
192245_s_at	WBGene00007258	hasp-1	4.71	I	-1	7229433	7233121
189001_s_at	WBGene00010498	K02B12.5	4.71	I	-1	8517481	8526621
192743_s_at	WBGene00002694	let-502	4.70	I	-1	4738171	4744321
189214_s_at	WBGene00003002	lin-13	4.70	III	-1	7700338	7709491
183635_s_at	WBGene00015310	fan-1	4.69	IV	1	6548818	6552511
188185_at	WBGene00003011	lin-25	4.69	V	1	12649858	12658718
174757_at	WBGene00010502	K02C4.3	4.69	II	-1	8080789	8086849
172044_x_at	WBGene00001284	emb-30	4.67	III	-1	9435083	9441539
188471_at	WBGene00010845	M03C11.8	4.64	III	-1	10428334	10435988
193883_s_at	WBGene00001580	gex-3	4.63	IV	1	12404374	12408697
185540_s_at	WBGene00003477	mtm-5	4.61	X	-1	5234669	5243408
187940_s_at	WBGene00022580	iglr-2	4.60	III	-1	8326516	8330947
194022_s_at	WBGene00009671	mfap-1	4.59	I	-1	8638514	8640236
173934_at	WBGene00008800	F14E5.2	4.59	II	-1	8423951	8428855
189236_s_at	WBGene00020964	polq-1	4.56	III	-1	5791171	5803042
188253_s_at	WBGene00009922	F52B5.3	4.56	I	-1	8318347	8323987
173436_at	WBGene00002694	let-502	4.55	I	-1	4738171	4744321
194047_s_at	WBGene00014078	ZK792.5	4.54	IV	-1	11684975	11688118
174168_s_at	WBGene00019124	F59E12.9	4.53	II	-1	5640063	5647042
173585_at	WBGene00008887	tbcd-1	4.52	I	-1	8363954	8369917
187473_at	WBGene00015157	B0361.3	4.52	III	1	7281377	7283959
193901_s_at	WBGene00004411	rpc-1	4.51	IV	-1	7160135	7165748
186847_s_at	WBGene00011502	vps-53	4.51	III	-1	9753672	9757514
174798_at	WBGene00022463	elpc-1	4.49	I	-1	5114119	5118852
182014_s_at	WBGene00017855	F27C1.6	4.48	I	-1	5421313	5428457
178479_s_at	WBGene00002295	let-19	4.45	II	1	8770975	8782020
188769_at	WBGene00016391	lonp-1	4.45	I	-1	10676922	10682374
174695_s_at	WBGene00018017	golg-2	4.43	II	-1	5036561	5040196
181895_s_at	WBGene00011532	chaf-1	4.43	I	-1	9077565	9080024
187686_at	WBGene00001660	gop-1	4.41	III	1	5254438	5258922
185306_at	WBGene00018864	F55A12.5	4.39	I	1	5345927	5349657
191313_at	WBGene00010732	K10C3.5	4.37	I	1	9863588	9869055
180151_s_at	WBGene00015642	C09E7.8	4.35	III	-1	6553575	6558575
188900_at	WBGene00007184	ctr-9	4.35	III	1	9491640	9497044
193824_s_at	WBGene00012245	rbm-25	4.35	V	1	12498213	12503738
193102_s_at	WBGene00004355	rha-1	4.32	II	-1	8878496	8883659
192673_s_at	WBGene00011415	him-18	4.29	III	-1	4712572	4715188
178953_s_at	WBGene00007087	B0001.2	4.27	IV	-1	12146486	12150975
190214_at	WBGene00016154	C27A12.2	4.27	I	1	6041672	6046018
188904_s_at	WBGene00018890	F55F8.2	4.26	I	-1	5646369	5649656
187673_at	WBGene00003421	msh-5	4.26	IV	1	13155228	13164056
189848_at	WBGene00009124	rtel-1	4.26	I	1	10571954	10577135
184324_s_at	WBGene00015743	soap-1	4.22	V	-1	7205626	7214903
184061_at	WBGene00020821	jhdm-1	4.22	III	1	6454483	6460014
187687_s_at	WBGene00015486	C05D11.9	4.22	III	-1	6427529	6430934
175797_at	WBGene00004855	sma-1	4.22	V	1	11899072	11916623
191781_s_at	WBGene00017686	tpp-2	4.21	II	-1	6092766	6097597
176489_at	WBGene00004166	pqn-85	4.21	II	-1	240722	255182
189740_at	WBGene00018877	aman-1	4.20	X	1	4732964	4738592
173541_at	WBGene00001860	him-1	4.18	I	-1	4951570	4957667
183675_s_at	WBGene00006442	tag-65	4.18	V	-1	13675988	13678598
193688_s_at	WBGene00002173	itr-1	4.17	IV	1	7675174	7696923
188080_s_at	WBGene00004955	spd-5	4.16	I	-1	5171285	5176664
189540_at	WBGene00007752	wdfy-3	4.16	IV	1	12653403	12674773
181834_at	WBGene00015017	B0205.1	4.13	I	-1	10713505	10718201
188110_s_at	WBGene00000156	apr-1	4.13	I	1	8050043	8055489
188695_s_at	WBGene00012386	agef-1	4.12	I	-1	13603885	13626225
179831_at	WBGene00009163	drsh-1	4.12	I	-1	9781338	9785722
173760_s_at	WBGene00003072	lrp-2	4.11	I	-1	3935272	3953991
171753_x_at	WBGene00003970	pek-1	4.11	X	-1	11410181	11414887
191627_at	WBGene00009678	magu-4	4.09	IV	1	10009354	10014187
177422_s_at	WBGene00009770	F46B6.5	4.09	V	-1	9779550	9783062
187315_s_at	WBGene00015061	cpna-2	4.09	II	1	7724903	7752715
190624_s_at	WBGene00003073	lars-1	4.09	III	-1	4181543	4186825
187628_s_at	WBGene00016277	C30G12.6	4.08	II	-1	7292192	7296015
193969_s_at	WBGene00009479	fcp-1	4.08	I	-1	9004513	9008708
179035_s_at	WBGene00007952	C35A5.8	4.05	V	-1	10521992	10525908
183823_s_at	WBGene00011604	T08A11.1	4.04	III	-1	4248155	4263048
174985_s_at	WBGene00004303	ran-2	4.04	III	1	7933535	7937708
181547_s_at	WBGene00016650	ubr-4	4.03	I	-1	4610147	4633377
174887_at	WBGene00000994	dic-1	4.03	IV	1	8692086	8696553
186016_s_at	WBGene00016603	met-1	4.02	I	1	4254380	4264699
188027_s_at	WBGene00000520	cku-80	4.02	III	1	4419848	4423368
191779_s_at	WBGene00011225	R10H10.7	4.02	IV	-1	10409985	10413928
179140_at	WBGene00003210	mel-28	4.02	III	1	4786080	4792391
174882_s_at	WBGene00019457	vms-1	4.01	III	1	8088482	8091730
176499_at	WBGene00000464	ceh-44	4.01	III	1	2530615	2546420
173519_at	WBGene00020234	T05A12.3	4.00	IV	-1	6883576	6887662
178967_at	WBGene00013893	coa-6	3.99	I	1	10345736	10348061
174704_at	WBGene00018995	ccpp-1	3.99	I	-1	5754312	5760803
189173_s_at	WBGene00009204	F28C6.4	3.98	II	-1	8596286	8600265
189004_at	WBGene00002637	let-418	3.97	V	1	5826833	5832866
181176_s_at	WBGene00009460	ubr-5	3.95	I	-1	8828048	8838719
173363_s_at	WBGene00002986	lig-4	3.95	III	1	7521004	7524836
173363_s_at	WBGene00197539	C07H6.13	3.95	III	1	7524270	7524355
182509_at	WBGene00009587	mig-38	3.95	IV	1	11594244	11601695
173070_s_at	WBGene00003367	mix-1	3.94	II	1	10824294	10841424
185329_s_at	WBGene00020234	T05A12.3	3.92	IV	-1	6883576	6887662
174870_at	WBGene00012528	pap-1	3.92	V	1	10441979	10446459
173499_s_at	WBGene00015061	cpna-2	3.92	II	1	7724903	7752715
177052_s_at	WBGene00021538	rabs-5	3.91	IV	-1	8104287	8107600
182424_at	WBGene00018995	ccpp-1	3.91	I	-1	5754312	5760803
192113_s_at	WBGene00020496	spat-3	3.91	X	-1	4596016	4605928
187307_at	WBGene00002231	knl-1	3.90	III	1	8250636	8254286
179516_at	WBGene00003133	mat-2	3.90	II	1	11112719	11120788
AFFX-r2-11687-3_s_at	WBGene00006801	unc-68	3.90	V	-1	6901697	6929038
176441_at	WBGene00022413	Y102A11A.3	3.89	X	1	2019148	2025737
188597_s_at	WBGene00002201	kin-18	3.89	III	1	6118627	6124055
173766_at	WBGene00002147	ire-1	3.88	II	-1	8112262	8124910
193706_s_at	WBGene00001112	duo-3	3.87	I	-1	10464328	10471056
173250_s_at	WBGene00015486	C05D11.9	3.86	III	-1	6427529	6430934
193714_at	WBGene00007048	nfx-1	3.85	III	1	6375379	6379190
189910_s_at	WBGene00001324	eor-1	3.85	IV	-1	4793202	4799378
187745_at	WBGene00004303	ran-2	3.85	III	1	7933535	7937708
191135_s_at	WBGene00007433	swsn-7	3.85	II	-1	8022649	8027756
181197_at	WBGene00016060	mms-19	3.85	V	1	5514348	5520458
173594_at	WBGene00021316	Y32H12A.8	3.84	III	-1	5385617	5406037
176309_at	WBGene00013680	rpom-1	3.84	I	-1	14552030	14565853
194019_at	WBGene00012528	pap-1	3.83	V	1	10441979	10446459
188899_s_at	WBGene00007329	C05C10.2	3.82	II	1	9922248	9930830
178014_s_at	WBGene00012298	prmt-7	3.81	I	-1	9060493	9063160
173280_at	WBGene00021344	rev-3	3.80	III	-1	5774679	5790707
174118_at	WBGene00020821	jhdm-1	3.78	III	1	6454483	6460014
187099_s_at	WBGene00006450	tag-77	3.77	IV	-1	8503493	8510559
174845_s_at	WBGene00022717	hipr-1	3.77	III	1	8720201	8725334
181627_at	WBGene00017284	sec-6	3.73	II	1	5359552	5372122
177122_at	WBGene00001833	hcp-6	3.73	I	1	5165152	5171313
193633_s_at	WBGene00000271	brf-1	3.72	II	1	7305861	7308738
186133_s_at	WBGene00018193	F39C12.1	3.72	X	-1	4834881	4853065
190576_s_at	WBGene00010629	K07C5.6	3.72	V	-1	10353584	10355837
188329_at	WBGene00000148	aph-2	3.71	I	1	10340997	10345648
174598_s_at	WBGene00004204	swsn-4	3.71	IV	1	11126024	11131162
173441_s_at	WBGene00001284	emb-30	3.69	III	-1	9435083	9441539
193043_at	WBGene00001001	dis-3	3.69	IV	1	10097196	10106556
181105_at	WBGene00005006	spr-1	3.68	V	-1	8126663	8129352
174682_at	WBGene00010845	M03C11.8	3.68	III	-1	10428334	10435988
190956_at	WBGene00014028	trxr-2	3.67	III	1	8913769	8916450
173603_at	WBGene00011720	T11G6.5	3.67	IV	-1	10835827	10842761
187398_s_at	WBGene00018891	F55F8.3	3.67	I	-1	5649756	5653648
175775_s_at	WBGene00003034	lin-49	3.65	IV	1	8620683	8626149
191351_s_at	WBGene00008119	C46F11.4	3.65	III	-1	3657716	3664494
181843_s_at	WBGene00019627	hira-1	3.65	III	1	5191131	5196028
178251_s_at	WBGene00011747	sna-2	3.64	IV	-1	9774563	9777634
184520_at	WBGene00019712	rmh-1	3.63	I	1	5573214	5576749
181010_s_at	WBGene00003858	ogt-1	3.63	III	-1	7145816	7153795
192236_at	WBGene00015557	C06G4.1	3.63	III	1	7987121	7990613
182060_at	WBGene00000994	dic-1	3.63	IV	1	8692086	8696553
186119_s_at	WBGene00020028	R12C12.8	3.62	II	-1	6057379	6061520
190409_at	WBGene00006935	vars-1	3.62	V	1	8031411	8035014
173622_s_at	WBGene00017373	F10G7.10	3.62	II	-1	4713674	4726264
189229_s_at	WBGene00001026	dnj-8	3.62	II	-1	6594382	6598080
186812_s_at	WBGene00021316	Y32H12A.8	3.61	III	-1	5385617	5406037
181749_at	WBGene00011885	T21B10.3	3.61	II	1	8934382	8939038
193271_s_at	WBGene00008694	vwa-8	3.59	X	1	12991447	12999638
175774_at	WBGene00003034	lin-49	3.58	IV	1	8620683	8626149
172707_x_at	WBGene00020784	tat-4	3.58	II	-1	6234483	6244287
189853_s_at	WBGene00006595	top-1	3.58	I	1	13292506	13297555
192576_s_at	WBGene00005009	spr-4	3.58	I	1	8103601	8109227
182161_at	WBGene00007647	C17E4.10	3.57	I	1	9435377	9441029
192643_at	WBGene00007386	C06H2.2	3.57	V	1	11125222	11127306
180009_at	WBGene00019087	F59A6.5	3.56	II	1	4999520	5003806
181848_at	WBGene00017797	symk-1	3.56	V	1	8570311	8581397
190772_s_at	WBGene00015754	C14B9.8	3.55	III	-1	8139610	8144629
173211_at	WBGene00007514	catp-8	3.54	IV	-1	11473363	11479251
181915_at	WBGene00010357	H03A11.2	3.54	X	-1	15225869	15230645
174372_s_at	WBGene00022413	Y102A11A.3	3.54	X	1	2019148	2025737
171803_x_at	WBGene00019883	met-2	3.53	III	1	8375300	8380833
189012_s_at	WBGene00004204	swsn-4	3.52	IV	1	11126024	11131162
174773_at	WBGene00009587	mig-38	3.52	IV	1	11594244	11601695
178806_s_at	WBGene00007621	C16C2.4	3.51	I	-1	9712824	9715230
191644_at	WBGene00003475	mtm-1	3.51	I	1	5134709	5137971
173828_s_at	WBGene00006801	unc-68	3.51	V	-1	6901697	6929038
184203_at	WBGene00004873	smc-3	3.50	III	1	11290911	11306145
181582_at	WBGene00008934	F18C12.3	3.50	I	1	8095740	8098444
180508_s_at	WBGene00007587	mma-1	3.49	V	-1	12592568	12596296
191730_s_at	WBGene00006776	unc-40	3.49	I	-1	5679844	5691503
192489_s_at	WBGene00016140	rpb-2	3.49	III	1	4939567	4944404
173306_s_at	WBGene00001001	dis-3	3.49	IV	1	10097196	10106556
176572_at	WBGene00002986	lig-4	3.48	III	1	7521004	7524836
173010_at	WBGene00020235	T05A12.4	3.48	IV	1	6887948	6897777
177822_s_at	WBGene00004684	rsd-6	3.47	I	-1	8358254	8363858
192077_at	WBGene00016352	tbck-1	3.47	II	1	4828560	4832469
181039_at	WBGene00011807	T16G12.6	3.47	III	1	10069564	10075995
171989_x_at	WBGene00014165	puf-12	3.47	II	1	10100310	10103059
175644_s_at	WBGene00003160	mdf-1	3.46	V	-1	9541782	9544226
173977_at	WBGene00001112	duo-3	3.46	I	-1	10464328	10471056
184112_at	WBGene00021058	vps-18	3.46	II	1	4461130	4467895
192463_s_at	WBGene00004800	sir-2.1	3.45	IV	-1	10363318	10366249
188440_at	WBGene00002248	lam-3	3.45	I	1	10608466	10621433
182257_at	WBGene00002248	lam-3	3.45	I	1	10608466	10621433
178069_s_at	WBGene00013859	ZC247.1	3.45	I	-1	10264314	10279234
174591_at	WBGene00001017	dnc-1	3.44	IV	-1	10926730	10933203
184995_s_at	WBGene00015425	C04E6.11	3.43	V	-1	5914097	5917891
191621_s_at	WBGene00004855	sma-1	3.43	V	1	11899072	11916623
184861_at	WBGene00004728	sax-2	3.42	III	1	5109701	5130673
174837_s_at	WBGene00017657	F21C10.7	3.41	V	1	9112767	9122180
189453_s_at	WBGene00019074	cpd-1	3.41	I	1	5520389	5529763
182131_s_at	WBGene00009254	capg-1	3.41	I	-1	7634494	7639780
191070_at	WBGene00000880	cyn-4	3.41	II	-1	10870779	10872611
184067_at	WBGene00016418	hpo-27	3.40	I	1	5906662	5918229
173009_s_at	WBGene00000181	ard-1	3.39	IV	1	11131279	11133785
173009_s_at	WBGene00004204	swsn-4	3.39	IV	1	11126024	11131162
188639_at	WBGene00008145	set-5	3.39	V	1	14698957	14707601
190212_s_at	WBGene00018520	F46H5.4	3.38	X	-1	7245057	7254792
174592_s_at	WBGene00001017	dnc-1	3.38	IV	-1	10926730	10933203
177435_at	WBGene00000938	dcp-66	3.38	I	-1	7536204	7542157
181469_s_at	WBGene00008685	mon-2	3.37	IV	1	12096779	12105762
183681_s_at	WBGene00010844	prp-3	3.37	III	-1	10424112	10427982
182574_at	WBGene00013204	Y54E5B.2	3.36	I	-1	14815706	14820222
192826_s_at	WBGene00001568	snpc-4	3.36	I	1	8962322	8966129
187986_s_at	WBGene00001081	dpy-22	3.35	X	-1	9810202	9822273
174328_at	WBGene00007227	C01G6.5	3.35	II	-1	9275024	9280098
173794_at	WBGene00015754	C14B9.8	3.34	III	-1	8139610	8144629
188186_s_at	WBGene00003011	lin-25	3.34	V	1	12649858	12658718
173629_at	WBGene00009460	ubr-5	3.33	I	-1	8828048	8838719
177485_s_at	WBGene00013919	ZC506.1	3.33	X	1	9958899	9964747
174717_at	WBGene00008878	ppfr-1	3.32	I	-1	9364099	9389982
176289_s_at	WBGene00004782	set-2	3.31	III	-1	4922446	4930204
181909_s_at	WBGene00020412	T10E9.2	3.29	I	1	6542090	6544966
193221_s_at	WBGene00007620	ocrl-1	3.27	I	-1	9715321	9728108
182642_s_at	WBGene00004140	ebax-1	3.26	IV	1	10286955	10293013
173433_s_at	WBGene00003858	ogt-1	3.26	III	-1	7145816	7153795
193194_at	WBGene00000151	apn-1	3.26	II	1	8047564	8049105
172617_x_at	WBGene00019168	H06I04.3	3.26	III	1	3070523	3085268
188876_s_at	WBGene00008921	ctf-4	3.25	V	-1	10961722	10965562
179760_at	WBGene00011248	R11D1.10	3.25	V	1	12729520	12731801
181982_s_at	WBGene00015037	B0212.3	3.25	IV	1	3540136	3543603
181982_s_at	WBGene00019777	M57.1	3.25	IV	1	3533641	3539046
194091_s_at	WBGene00000834	cua-1	3.25	III	-1	13439730	13455307
175611_at	WBGene00003221	mes-3	3.25	I	1	4996839	5003161
187742_at	WBGene00005006	spr-1	3.25	V	-1	8126663	8129352
179136_at	WBGene00044008	gip-2	3.25	I	1	9228163	9232097
191178_s_at	WBGene00002147	ire-1	3.23	II	-1	8112262	8124910
178234_at	WBGene00004051	parg-1	3.22	IV	1	8746252	8752676
189605_at	WBGene00001328	epi-1	3.22	IV	1	10666827	10679289
189009_s_at	WBGene00006512	abcf-1	3.22	V	-1	12761044	12763375
174841_at	WBGene00006997	zyg-12	3.22	II	1	4949902	4953488
176147_s_at	WBGene00004726	sas-4	3.20	III	-1	8314349	8318588
174549_at	WBGene00017967	ada-2	3.18	II	1	7252259	7255735
191449_s_at	WBGene00000840	cul-5	3.18	V	1	10179535	10183154
182418_s_at	WBGene00008694	vwa-8	3.18	X	1	12991447	12999638
175085_at	WBGene00008430	hgap-2	3.18	II	-1	8669133	8684897
172949_s_at	WBGene00001026	dnj-8	3.17	II	-1	6594382	6598080
182056_at	WBGene00018848	F55A3.2	3.15	I	1	10793161	10798059
175589_s_at	WBGene00018317	F41H10.4	3.15	IV	1	5364559	5366751
176159_s_at	WBGene00000537	clk-2	3.14	III	-1	7515223	7518524
193872_s_at	WBGene00003071	lrp-1	3.14	I	1	7614176	7634135
190714_at	WBGene00008386	cdc-5L	3.14	I	1	8491291	8495855
184195_at	WBGene00017313	cpsf-2	3.14	V	1	7179172	7182853
173827_at	WBGene00006801	unc-68	3.13	V	-1	6901697	6929038
173734_at	WBGene00017358	F10E9.7	3.13	III	-1	8305733	8326818
173734_at	WBGene00022580	iglr-2	3.13	III	-1	8326516	8330947
192207_at	WBGene00000259	bpl-1	3.12	II	1	6274115	6279699
176022_at	WBGene00003801	npp-15	3.11	III	1	7929013	7932993
189798_s_at	WBGene00001134	eat-3	3.10	II	1	9324874	9329665
187827_s_at	WBGene00018512	trpp-8	3.10	I	-1	5610375	5616402
187827_s_at	WBGene00045082	F46F11.12	3.10	I	-1	5611663	5611817
177809_s_at	WBGene00009127	clsp-1	3.10	I	-1	9159938	9163261
187556_s_at	WBGene00020383	tin-44	3.10	I	-1	6177983	6180840
192588_s_at	WBGene00009368	pole-1	3.09	I	-1	15005603	15013904
173260_s_at	WBGene00001830	hcp-2	3.08	V	1	9645746	9650297
192532_s_at	WBGene00007588	C14C10.5	3.08	V	1	12600192	12607304
191009_s_at	WBGene00012868	tbc-9	3.08	IV	-1	13476935	13502852
174162_s_at	WBGene00001833	hcp-6	3.07	I	1	5165152	5171313
185224_at	WBGene00020935	fnci-1	3.07	I	-1	6745991	6753031
187965_s_at	WBGene00006436	ttn-1	3.06	V	-1	6120909	6202626
188578_at	WBGene00019245	sacy-1	3.06	I	1	6851372	6854140
192582_at	WBGene00007227	C01G6.5	3.05	II	-1	9275024	9280098
176713_s_at	WBGene00044077	tag-232	3.04	V	-1	9213746	9217243
174889_s_at	WBGene00002231	knl-1	3.04	III	1	8250636	8254286
191864_s_at	WBGene00017063	mctp-1	3.03	I	-1	6629717	6637429
194136_s_at	WBGene00006759	unc-22	3.03	IV	-1	11972697	12011007
173462_s_at	WBGene00003002	lin-13	3.03	III	-1	7700338	7709491
187169_s_at	WBGene00006734	ufd-2	3.03	II	1	8062741	8066193
187169_s_at	WBGene00011510	pdha-1	3.03	II	1	8066111	8068184
173715_s_at	WBGene00015237	B0511.12	3.03	I	-1	10654298	10666933
188776_s_at	WBGene00004322	rcq-5	3.02	III	-1	4052807	4057976
188776_s_at	WBGene00011369	T02C12.4	3.02	III	-1	4041224	4042811
173313_s_at	WBGene00015296	gtf-2F1	3.02	II	1	4301607	4305287
189823_s_at	WBGene00000485	che-3	3.01	I	-1	8062059	8081671
181800_at	WBGene00007050	utp-20	3.01	II	1	6536380	6554846
192906_at	WBGene00001651	gon-2	3.01	I	-1	8549513	8570998
190390_s_at	WBGene00010626	K07C5.3	3.00	V	1	10343032	10345489
182545_at	WBGene00007282	clec-223	2.99	V	1	11273148	11278161
187583_s_at	WBGene00020068	cra-1	2.99	III	-1	6865207	6869460
174498_at	WBGene00002295	let-19	2.99	II	1	8770975	8782020
176748_s_at	WBGene00015968	C18C4.7	2.99	V	-1	5550315	5567221
181735_at	WBGene00006997	zyg-12	2.99	II	1	4949902	4953488
181540_s_at	WBGene00018908	fncm-1	2.99	I	1	5190142	5195243
189931_at	WBGene00008294	clec-11	2.99	I	-1	12459499	12460903
181611_at	WBGene00004348	rgs-5	2.98	III	1	5698430	5702304
178943_at	WBGene00003136	mau-2	2.97	I	1	8125801	8130091
183866_s_at	WBGene00022812	uvs-1	2.96	V	-1	7801518	7803727
178231_s_at	WBGene00009352	F33A8.4	2.96	II	-1	11045786	11049030
183878_at	WBGene00017300	rpc-2	2.96	III	1	5557344	5564837
174732_s_at	WBGene00015057	gad-3	2.96	V	-1	9168393	9173024
188564_at	WBGene00006893	spon-1	2.95	II	1	7116557	7120558
187407_s_at	WBGene00015204	B0495.5	2.95	II	-1	7695935	7698506
180022_s_at	WBGene00016494	C37A2.8	2.95	I	-1	6798232	6799674
189462_s_at	WBGene00004343	rgr-1	2.95	III	1	9393981	9404532
183897_s_at	WBGene00016376	sec-10	2.95	IV	-1	7779379	7782499
172953_s_at	WBGene00002173	itr-1	2.95	IV	1	7675174	7696923
179451_at	WBGene00009200	F28C1.1	2.94	V	1	12450807	12453336
189690_s_at	WBGene00011771	T14G8.3	2.94	X	1	12861237	12870025
194266_x_at	WBGene00016170	tmem-131	2.93	III	-1	4991439	4998161
187675_s_at	WBGene00000585	cogc-2	2.93	IV	-1	7036960	7039580
173949_s_at	WBGene00009508	row-1	2.91	I	-1	10475522	10478129
181446_s_at	WBGene00007412	stip-1	2.91	II	-1	10346981	10350007
190536_s_at	WBGene00000543	clp-2	2.91	III	-1	4700325	4704054
173543_at	WBGene00015743	soap-1	2.90	V	-1	7205626	7214903
188017_s_at	WBGene00003221	mes-3	2.90	I	1	4996839	5003161
173447_s_at	WBGene00004746	sdc-2	2.90	X	1	11522707	11533450
180751_s_at	WBGene00018892	cir-1	2.89	I	-1	5653804	5655857
192570_s_at	WBGene00001872	him-14	2.89	II	-1	7065020	7069966
194214_x_at	WBGene00001830	hcp-2	2.88	V	1	9645746	9650297
193940_s_at	WBGene00003970	pek-1	2.88	X	-1	11410181	11414887
183804_at	WBGene00014208	ZK1067.2	2.87	II	1	9213658	9222798
186648_at	WBGene00009711	F44G4.1	2.86	II	1	8994636	8996269
176644_at	WBGene00011912	T22C1.1	2.86	I	1	7936223	7938328
173181_s_at	WBGene00016170	tmem-131	2.85	III	-1	4991439	4998161
190533_s_at	WBGene00000196	aars-1	2.84	II	-1	11460215	11464129
186677_s_at	WBGene00021311	thoc-5	2.84	III	-1	5345982	5349401
179765_at	WBGene00015640	C09E7.6	2.84	III	-1	6541550	6546425
187590_at	WBGene00006946	prx-10	2.83	III	1	5236410	5240055
184122_at	WBGene00019762	M03F8.3	2.82	V	1	5940024	5943362
187840_s_at	WBGene00022853	ZK1127.6	2.82	II	1	7042884	7044633
187840_s_at	WBGene00022855	tcer-1	2.82	II	-1	7046041	7050071
174707_s_at	WBGene00001978	hmp-1	2.82	V	1	11845877	11852165
175896_at	WBGene00001565	gei-8	2.81	III	-1	8111166	8126222
174143_at	WBGene00007752	wdfy-3	2.80	IV	1	12653403	12674773
173631_at	WBGene00009254	capg-1	2.80	I	-1	7634494	7639780
177921_at	WBGene00008094	C44H4.4	2.79	X	-1	14568854	14589101
189930_s_at	WBGene00018156	ncbp-1	2.79	I	1	6421978	6425794
176790_at	WBGene00017758	F23H11.2	2.79	III	1	895786	900158
185487_s_at	WBGene00019554	K09C4.10	2.78	X	-1	3276020	3280230
183355_s_at	WBGene00001795	gtl-1	2.77	IV	-1	11248884	11259535
190288_at	WBGene00007071	AC3.5	2.77	V	1	10388402	10393504
187406_s_at	WBGene00017607	F19F10.11	2.77	V	-1	7581473	7587698
187621_s_at	WBGene00022865	ufbp-1	2.76	III	-1	8439468	8443607
187879_at	WBGene00015581	C07H6.4	2.75	III	1	7499677	7503241
191455_s_at	WBGene00003996	pgp-2	2.75	I	1	5886613	5895970
174144_at	WBGene00018481	F45F2.9	2.74	V	-1	8512689	8513463
174144_at	WBGene00018482	F45F2.10	2.74	V	-1	8513577	8518764
193795_s_at	WBGene00016015	C23G10.8	2.74	III	-1	6202619	6206211
187994_at	WBGene00006436	ttn-1	2.74	V	-1	6120909	6202626
190721_s_at	WBGene00001978	hmp-1	2.74	V	1	11845877	11852165
177653_s_at	WBGene00009954	F53B2.1	2.74	IV	-1	12517110	12518128
177653_s_at	WBGene00011237	gkow-1	2.74	IV	1	10358141	10360219
181546_at	WBGene00016650	ubr-4	2.73	I	-1	4610147	4633377
174475_s_at	WBGene00018482	F45F2.10	2.73	V	-1	8513577	8518764
173901_s_at	WBGene00002153	iars-2	2.72	I	1	10180249	10184075
191461_at	WBGene00011032	ddx-52	2.72	I	1	8598658	8600923
193700_s_at	WBGene00004254	pxf-1	2.72	IV	-1	10164331	10174341
179781_at	WBGene00015638	C09E7.4	2.71	III	-1	6534467	6536995
186010_at	WBGene00016326	ubr-1	2.71	I	-1	3807458	3816809
173690_at	WBGene00009770	F46B6.5	2.71	V	-1	9779550	9783062
188384_s_at	WBGene00007053	chd-7	2.71	I	-1	4685865	4698575
192841_at	WBGene00011067	vps-11	2.71	II	-1	10788106	10793493
174976_at	WBGene00009498	tat-5	2.69	I	-1	9234174	9245924
173385_at	WBGene00006776	unc-40	2.69	I	-1	5679844	5691503
185310_at	WBGene00019217	athp-2	2.68	II	1	4340151	4350984
175161_at	WBGene00009010	F21D5.5	2.68	IV	-1	8735695	8739394
187932_at	WBGene00004744	scp-1	2.67	II	1	9334014	9338896
191396_s_at	WBGene00004040	pld-1	2.66	II	-1	5083848	5091690
175679_at	WBGene00001194	egl-27	2.66	II	1	6835021	6847906
190882_s_at	WBGene00011242	R11D1.1	2.66	V	1	12704382	12707761
193340_at	WBGene00006932	vps-34	2.66	I	1	6028486	6033457
191486_at	WBGene00010077	F55A11.4	2.65	V	1	11770456	11773495
173636_at	WBGene00004457	rpm-1	2.65	V	-1	8805416	8819955
173957_s_at	WBGene00007100	asps-1	2.65	V	-1	10315245	10317394
186391_s_at	WBGene00016014	C23G10.7	2.65	III	-1	6195984	6198414
173343_s_at	WBGene00012342	mtr-4	2.65	IV	1	9825694	9830620
191297_at	WBGene00004005	pgp-11	2.64	II	-1	7995587	8003152
183604_at	WBGene00011605	sftb-1	2.64	III	-1	4263785	4269270
174205_at	WBGene00016408	prmt-5	2.64	III	1	5230555	5234530
191263_at	WBGene00014249	ZK1307.8	2.64	II	1	9624590	9626641
175743_at	WBGene00002201	kin-18	2.64	III	1	6118627	6124055
177927_at	WBGene00007804	C29F3.3	2.64	V	-1	15346674	15347411
172050_x_at	WBGene00022211	Y73B3A.9	2.63	X	-1	150363	157246
183708_at	WBGene00016750	let-611	2.63	I	1	6255035	6257791
175098_s_at	WBGene00016967	C56C10.11	2.63	II	-1	6598349	6601119
174651_s_at	WBGene00019432	knl-2	2.62	I	1	6460433	6464286
173320_s_at	WBGene00017300	rpc-2	2.62	III	1	5557344	5564837
173732_s_at	WBGene00010890	ddb-1	2.62	IV	-1	12114810	12121183
190328_s_at	WBGene00012243	W04D2.4	2.61	V	-1	12494728	12497755
188363_s_at	WBGene00020334	epg-7	2.61	X	1	7334714	7340224
182196_s_at	WBGene00014243	dcaf-1	2.61	IV	-1	9696989	9706723
194264_x_at	WBGene00008094	C44H4.4	2.61	X	-1	14568854	14589101
173764_at	WBGene00001081	dpy-22	2.60	X	-1	9810202	9822273
187477_s_at	WBGene00017607	F19F10.11	2.60	V	-1	7581473	7587698
185312_at	WBGene00016889	lst-6	2.60	II	-1	7012787	7022509
177714_at	WBGene00014132	ZK896.1	2.60	IV	-1	12872829	12875360
176736_at	WBGene00016944	uri-1	2.59	I	1	6494216	6496109
191795_s_at	WBGene00008781	rpoa-2	2.59	I	-1	9280963	9286577
187592_s_at	WBGene00006946	prx-10	2.59	III	1	5236410	5240055
190690_s_at	WBGene00012341	catp-6	2.59	IV	-1	9817412	9824632
171974_x_at	WBGene00001026	dnj-8	2.58	II	-1	6594382	6598080
192290_s_at	WBGene00006437	mrck-1	2.58	V	-1	6257392	6267287
193440_s_at	WBGene00008878	ppfr-1	2.57	I	-1	9364099	9389982
183546_s_at	WBGene00019323	teg-4	2.57	I	1	6814511	6834687
186229_at	WBGene00018482	F45F2.10	2.57	V	-1	8513577	8518764
174961_s_at	WBGene00004744	scp-1	2.57	II	1	9334014	9338896
174998_s_at	WBGene00013042	cccp-1	2.56	III	1	12472868	12484651
191154_at	WBGene00020197	mans-3	2.55	X	1	5165395	5168778
172986_s_at	WBGene00013859	ZC247.1	2.55	I	-1	10264314	10279234
175632_at	WBGene00004746	sdc-2	2.55	X	1	11522707	11533450
182757_at	WBGene00009996	F53F4.14	2.55	V	1	13627573	13629831
177622_at	WBGene00001830	hcp-2	2.55	V	1	9645746	9650297
192936_s_at	WBGene00006307	suf-1	2.55	II	1	8603846	8606744
172923_x_at	WBGene00010279	letm-1	2.55	V	1	13661261	13664233
188806_at	WBGene00007340	C05D12.2	2.55	II	1	11418314	11423393
190074_s_at	WBGene00015296	gtf-2F1	2.55	II	1	4301607	4305287
173899_at	WBGene00013869	mlck-1	2.54	X	-1	10062451	10069783
189593_at	WBGene00014220	ZK1098.3	2.54	III	-1	9532427	9538700
187241_s_at	WBGene00007627	ccdc-55	2.54	III	-1	4166944	4168765
183013_at	WBGene00011576	rmh-2	2.54	V	-1	9927782	9930775
173722_at	WBGene00011532	chaf-1	2.54	I	-1	9077565	9080024
190424_at	WBGene00006941	wnk-1	2.54	IV	1	9200102	9212235
188256_at	WBGene00004885	smg-7	2.54	IV	-1	6740496	6742443
193287_s_at	WBGene00009507	mus-101	2.53	I	-1	10479283	10484969
191733_at	WBGene00010875	M05D6.2	2.53	II	1	8468109	8470162
173538_s_at	WBGene00019729	M02D8.3	2.52	X	-1	8732958	8737015
174130_at	WBGene00019629	cid-1	2.52	III	1	5173922	5180507

Hemi-module B genes

affy_c_elegans	ensembl_gene_id	external_gene_name	module_weight	chromosome_name	strand	start_position	end_position
173673_s_at	WBGene00012343	W08E3.2	-3.29	I	-1	13333380	13336146
189757_s_at	WBGene00010941	gss-1	-3.14	II	-1	9414559	9416431
172305_x_at	WBGene00012739	Y40B1B.7	-3.01	I	-1	13426454	13428471
178382_s_at	WBGene00010115	aakb-1	-3.00	X	1	13755771	13759391
192433_s_at	WBGene00010094	tsfm-1	-2.90	V	-1	12270271	12271551
182751_at	WBGene00015860	C16D9.5	-2.86	V	-1	8243709	8245400