Information for 1-GCGACCAG (Motif 4)

A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G C G A T A G T C A C T G A G T C
p-value:1e-6
log p-value:-1.427e+01
Information Content per bp:1.923
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif690.6
Percentage of Background Sequences with motif1.93%
Average Position of motif in Targets334.0 +/- 233.6bp
Average Position of motif in Background478.6 +/- 318.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

sma-4/MA0925.1/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCGACCAG-----
--NNCCAGACANN
 A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G T A C A G T C C G T A A C T G C G T A G T A C C G T A A G T C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCGACCAG-
---CACAGN
 A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

PL0012.1_hlh-2::hlh-8/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCGACCAG--------
NANACCAGATGTTTNN
 A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A T G T G C A G C A T C T G A T G A C T G A C C G T A A C T G T C G A A C G T C A T G A C G T A C G T A C G T T C G A G A C T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GCGACCAG---
ACTAGCCAATCA
 A C G T A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

POL002.1_INR/Jaspar

Match Rank:5
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GCGACCAG----
----TCAGTCTT
 A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

PL0013.1_hlh-2::hlh-15/Jaspar

Match Rank:6
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-GCGACCAG-------
AGGGCCCAGCTGNTNN
 A C G T A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A C T G C A T G T A C G G T A C T A G C T G A C C G T A A T C G T A G C C G A T C A T G A T C G A C G T A G T C G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.47
Offset:5
Orientation:forward strand
Alignment:GCGACCAG--
-----CAGCC
 A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:GCGACCAG
-TGACCT-
 A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

PL0010.1_hlh-2::hlh-19/Jaspar

Match Rank:9
Score:0.46
Offset:0
Orientation:forward strand
Alignment:GCGACCAG--------
TTTAACAGCTGTTACA
 A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T C A G T T C G A T G C A G T A C C T G A A C T G T A G C G C A T C A T G A C G T A G C T G T C A G T A C G T C A

hlh-1/MA0545.1/Jaspar

Match Rank:10
Score:0.45
Offset:2
Orientation:forward strand
Alignment:GCGACCAG-----
--GAACAGCTGTC
 A C T G A G T C C T A G C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A T C G A A G T C C G T A T C A G G A T C A G C T A C T G C G A T A G T C