Information for 3-GTTGGTTGGGTT (Motif 3)

A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
Reverse Opposite:
T C G A C G T A G T A C T G A C A G T C T C G A C G T A A G T C A G T C G T C A C T G A A T G C
p-value:1e-7
log p-value:-1.708e+01
Information Content per bp:1.679
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif80.00%
Number of Background Sequences with motif2669.0
Percentage of Background Sequences with motif7.46%
Average Position of motif in Targets525.5 +/- 317.0bp
Average Position of motif in Background503.3 +/- 305.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL007.1_BREd/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTTGGTTGGGTT
GTTTGTT-----
 A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
C T A G A C G T C A G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTTGGTTGGGTT
--TGTTTATTT-
 A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
A C G T A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GTTGGTTGGGTT
TGTCGGTT-----
 A C G T A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
C G A T C A T G C G A T G A T C T C A G A T C G G C A T G C A T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GTTGGTTGGGTT
TGATTGGCTANN--
 A C G T A C G T A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.48
Offset:1
Orientation:forward strand
Alignment:GTTGGTTGGGTT
-CAGGTAAGTAT
 A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.48
Offset:1
Orientation:forward strand
Alignment:GTTGGTTGGGTT
-ATTGTT-----
 A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T

ceh-10::ttx-3/MA0263.1/Jaspar

Match Rank:7
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GTTGGTTGGGTT--
ATTGGCTTCGTTAA
 A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T A C G T A C G T
C T G A A C G T C G A T C T A G A C T G G A T C G A C T G A C T G T A C T C A G A C G T A G C T G C T A C T G A

MA0263.1_ttx-3::ceh-10/Jaspar

Match Rank:8
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GTTGGTTGGGTT--
ATTGGCTTCGTTAA
 A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T A C G T A C G T
C T G A A C G T C G A T C T A G A C T G G A T C G A C T G A C T G T A C T C A G A C G T A G C T G C T A C T G A

pha-4/MA0546.1/Jaspar

Match Rank:9
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:GTTGGTTGGGTT
--TGTTTACTTT
 A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T G A C T C G A T

PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer

Match Rank:10
Score:0.46
Offset:1
Orientation:forward strand
Alignment:GTTGGTTGGGTT
-KTGTTTGC---
 A T C G G A C T A C G T C T A G A C T G A C G T A C G T C T A G A C T G C A T G C G A T A G C T
A C G T C A T G A C G T C T A G A C G T C A G T A C G T C T A G A G T C A C G T A C G T A C G T