Information for 3-AAATAAATAA (Motif 4)

G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A
Reverse Opposite:
A G C T A C G T T C G A C G A T A C G T G A C T C T G A A C G T A C G T C G A T
p-value:1e-13
log p-value:-3.131e+01
Information Content per bp:1.829
Number of Target Sequences with motif219.0
Percentage of Target Sequences with motif47.00%
Number of Background Sequences with motif11926.9
Percentage of Background Sequences with motif30.15%
Average Position of motif in Targets586.7 +/- 295.8bp
Average Position of motif in Background532.6 +/- 319.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0005.1_Forkhead_class/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:AAATAAATAA
AAATAAACA-
 G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T

ceh-38/MA1699.1/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AAATAAATAA--
AAAAAAATCGATAATT
 A C G T A C G T A C G T A C G T G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A A C G T A C G T
G T C A C T G A C T G A C G T A G C T A C G T A C T G A G A C T G A T C C T A G C T G A G C A T G T C A G C T A G C A T G C A T

fkh-2/MA0920.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AAATAAATAA
--GTAAACAA
 G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A
A C G T A C G T C T A G C G A T G T C A C G T A C G T A G T A C C G T A G C T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAATAAATAA
-AATAATT--
 G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A
A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T

pal-1/MA0924.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAATAAATAA
GTAATAAA---
 A C G T G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A
C T A G A G C T G T C A C G T A A C G T C G T A C G T A G T C A A C G T A C G T A C G T

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAATAAATAA-
-CATYAATCAT
 G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A A C G T
A C G T G T A C C G T A C G A T G A T C G C T A C T G A A C G T G A T C C G T A G C A T

ces-2/MA0922.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAATAAATAA
-ATTACATAA
 G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A
A C G T C G T A A C G T C G A T C G T A A G T C C T A G A G C T C G T A C G T A

pha-4/MA0546.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAATAAATAA
AAAGTAAACA-
 A C G T G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A
G C T A C T G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A A C G T

mab-5/MA1442.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AAATAAATAA-
---TAATTAAT
 G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A A C G T
A C G T A C G T A C G T G A C T G C T A G C T A C G A T A C G T C G T A C T G A A C G T

zfh-2/MA0928.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAATAAATAA--
-NCTAATTAANN
 G C T A G T C A G T C A A G C T C T G A T G C A C G T A A G C T C G T A T C G A A C G T A C G T
A C G T G A C T A G T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A A G C T A C G T