Information for 4-TRCYYTMAYAMG (Motif 6)

A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G
Reverse Opposite:
A G T C A C G T A C G T C T G A A C G T A C T G C G T A C T A G C T G A A C T G A G T C C G T A
p-value:1e-5
log p-value:-1.377e+01
Information Content per bp:1.818
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif72.2
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets436.0 +/- 292.6bp
Average Position of motif in Background510.7 +/- 291.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

elt-2/MA1701.1/Jaspar

Match Rank:1
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TRCYYTMAYAMG--
----NTGATAAGAA
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T C A T G C T G A A C G T C G T A T C G A A C T G T C G A C T G A

elt-3/MA0542.1/Jaspar

Match Rank:2
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:TRCYYTMAYAMG-
-----TGATAAGA
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T C G T A C G T A T C A G C T G A

PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer

Match Rank:3
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TRCYYTMAYAMG-
---ACTGATAAGA
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G A C G T
A C G T A C G T A C G T C T G A G A T C G C A T A C T G C G T A A C G T C G T A C G T A T A C G T C G A

ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer

Match Rank:4
Score:0.49
Offset:3
Orientation:forward strand
Alignment:TRCYYTMAYAMG-
---AWTGATAAGA
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G A C G T
A C G T A C G T A C G T C G T A C G T A G C A T A C T G C G T A A G C T C T G A C G T A T A C G C T G A

pqm-1/MA1703.1/Jaspar

Match Rank:5
Score:0.48
Offset:2
Orientation:forward strand
Alignment:TRCYYTMAYAMG-
--AACTGATAAGA
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G A C G T
A C G T A C G T G C T A C T G A T A G C G A C T C A T G G C T A G C A T C G T A C T G A A T C G T C G A

elt-6/MA1439.1/Jaspar

Match Rank:6
Score:0.48
Offset:4
Orientation:forward strand
Alignment:TRCYYTMAYAMG
----CTGATAAG
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G
A C G T A C G T A C G T A C G T T A G C G C A T C T A G G C T A G A C T G C T A C G T A T A C G

vab-7/MA0927.1/Jaspar

Match Rank:7
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:TRCYYTMAYAMG
----TTAATTAG
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G
A C G T A C G T A C G T A C G T C A G T G A C T T G C A T C G A A C G T A C G T C T G A A C T G

zip-8/MA1704.1/Jaspar

Match Rank:8
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:TRCYYTMAYAMG
TGACGTCATNN-
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G
G A C T A C T G C T G A A G T C C A T G G A C T G T A C C G T A A G C T G T C A C T G A A C G T

zfh-2/MA0928.1/Jaspar

Match Rank:9
Score:0.46
Offset:2
Orientation:forward strand
Alignment:TRCYYTMAYAMG-
--AATTAATTAGA
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G A C G T
A C G T A C G T C G T A T C G A A G C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G C A G T

lim-4/MA0923.1/Jaspar

Match Rank:10
Score:0.45
Offset:4
Orientation:reverse strand
Alignment:TRCYYTMAYAMG-
----TTAATTAGN
 A C G T C T A G A G T C A G C T A G T C A C G T G T A C C G T A A G C T C G T A G T C A A C T G A C G T
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A A G C T A C G T C T G A T A C G A G T C