Information for 5-AGGTCGGGCT (Motif 12)

C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A G T C A G T C A C T G C G T A A G T C A G T C A C G T
p-value:1e-3
log p-value:-8.182e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets577.0 +/- 0.0bp
Average Position of motif in Background869.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGTCGGGCT
AGGTCA----
 C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:AGGTCGGGCT-
------NGCTN
 C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

POL003.1_GC-box/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGGTCGGGCT-
AGGGGGCGGGGCTG
 A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T A C G T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AGGTCGGGCT
--GGCGCGCT
 C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGGTCGGGCT
CAGGTAAGTAT
 A C G T C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

nhr-6/MA1451.1/Jaspar

Match Rank:6
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AGGTCGGGCT
AAAGGTCA----
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T
C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

sma-4/MA0925.1/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGGTCGGGCT
AGTGTCTGGAC
 A C G T C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T
C G T A T C A G A C G T A C T G C G A T A G T C A C G T C T A G A C T G T C G A A G T C

snpc-4/MA0544.1/Jaspar

Match Rank:8
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AGGTCGGGCT--
GTGTCGGCCGCT
 C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T
C T A G A G C T A C T G G A C T G T A C A C T G C A T G A G T C A G T C C T A G A G T C G A C T

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:AGGTCGGGCT-
-GGGCGGGACC
 C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer

Match Rank:10
Score:0.47
Offset:-8
Orientation:reverse strand
Alignment:--------AGGTCGGGCT
CCCGTRARRTGTCGG---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C T G A C T G A C T G A G T C A C G T
G T A C A G T C G A T C T C A G A G C T C T A G C T G A C T A G C T A G G A C T C T A G G C A T G T A C A T C G A C T G A C G T A C G T A C G T